Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03002 ATGCCTCTCGGTGAAACCTCCCTTCTCTGCGACGAAATCCGTTCTACCACCACCGGTGACTTTGTTCCTCCGCCTCGTTGTTCAGAGTTTTCAAGGGTTTTTCAACATTTCTGGGTTTTTCAACAGTTCTCGTTGTTGTTATCGTCATGGTCACATGGAGAAATTTGTGTTGCAGGTTCACGTGTGTTTGTTCAAGAAGGAATCTATGACGAATTTGAGAAGTTGGTGGAGAAAGCAAAAGCTTGGATTGTTGGTGATCCTTTGGATCCTAAAGTTCAGCAAGGACCTCAAGTATGA 297 0.4411 MPLGETSLLCDEIRSTTTGDFVPPPRCSEFSRVFQHFWVFQQFSLLLSSWSHGEICVAGSRVFVQEGIYDEFEKLVEKAKAWIVGDPLDPKVQQGPQV 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03002 98 Pfam Aldehyde dehydrogenase family 50 98 IPR015590 GO:0016491
Tsu04g03002 98 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 33 98 IPR016163 GO:0016620
Tsu04g03002 98 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 44 98 - -
Tsu04g03002 98 SUPERFAMILY ALDH-like 50 98 IPR016161 GO:0016491
Tsu04g03002 98 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 44 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03002 Tsu-Chr4 37049672 37053423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03002 43 98 Aldehyde Dehydrogenase Gene Family AT3G24503 66.667 3.21e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03002 K12355 - gmx:100811540 90.5077