Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03001 ATGGTTTTCTATaccaccttcttcttctccttgATTTTCATCACTTTCCCTGTTAATTCAATTCACTTCCAATTTTCCCGTTTTAATCCTAATGATCCCAACTTATTCTACCAAGGATCTGCAGCACCACTAGATAGACTAGTAAATTTTAACATCAATGAGTTATATTCATGTCAAATTGGAAGAGTCTTGTATTCAGAAAAAGTGTTAATTTGGGACTCAAAAACAGGTCAACTCACTGATTTCACAACTCATTACACTTTTATAATCAACACTCAAAATCATACTTCATATGGCCATGGTCTTGCCTTTTTTATGGTACCTTTTGGATTTGAGTTCCCACTCAATTCCGATGGCGGCTTTATGGGTCTATTTAACACCACAACAATGGATTCACCTGGTAACCAAATGGTTCATGTAGAGTTTGATTCTTACCCAAATGGTGAATGGGGTGAGAAATCAGAGCATGTGGGAATCAACAAGAATTCAATTATATCATCAGCATCAGTAACTTGGAATGCAAGTATACATAGTGGAGACTCTGCTGATGTATGGATTAGTTATAATTCTACAACTAAGAATTTGACTGTAACTTGGAAATACCAAGCCACCCCTGATCCTCAAGAAAATACTAGTCTTTCGTTACCGATTGATTTATCGAAGATACTACCTGAATGGGCTACTGTGGGATTTTCTGCTGCAACAAGTTTTGTTGGAGaaataaattatcttttgtCATGGGAATTCAACTCCACTTTGGAAAAAAGTGGTGATAGTAATATAAAAGAGACAAGATTAGTTGTTGTAATAGTAACAGTTTCTTGTGTGGTTTTAGTTTTGGGAGCATTAGCAATACATGCATTAGTTTggaggaaaagaaagagaagtaaaaaacaaaaggaagagTCTATGCATTTAACATCAATGAATAATGACCTTGAAAGAGGAGCAGGACCAAGGAGGTTCACCTACAAAGAACTTTATTTGGCTACCAATAACTTCTCTAAGGATAGAAAGTTAGGTCAAGGTGGATTCGGAGCTGTTTTTAAAGGCTACTTTGCTGATTTAGATTTACAAGTTGCTGTAAAGAAAATATCAAGAGGATCAAAACAAGGTAAGAAAGAGTATGTAACCGAAGTCAAAGTCATTAGTCAACTAAGACATAGGAATCTTGTGAAGTTGTTAGGTTGGTGTCATGACAAAGGTGAGTTTCTTCTTGTTTATGAGTTTATGCCAAATGGTAGTCTCGATTCTCATTTATTCGGTAAAAGAACACCTCTTTCTTGGAGTGCAAGGCACAAAATAACTCTTGGATTGGCATCTTGTTTGCTATATCTACATGAAGAATGGGAGAGGTGTGTGGTTCATAGGGATATTAAATCAAGTAATGTTATGTTAGATTCTAATTTCAATGTCAAGCTTGGTGATTTTGGGTTGGCTAAACTAATGGATCACGAACTCGGGCCGCAAACAACTGGGATAGCAGGAACATTAGGCTATCTATCTCCAGAATATGTAAGTACAGGCAGGGCTAGTAAAGAGTCAGATGTGTATAGTTTTGGTATAGTTGTCTTGGAAATCACCACAGGAAAGAAAGCCATTGAAGTTATAAAGGACATAGATGGAGAGAAGGGAATGATTGATTGGGTTTGGGATCATTATGGAAAAGGAGAGTTACTTGTGACCATGGATGAGAATCTGAAAAGGGATTTTGATGAGAAACAAATTGTGTGTTTAATGGTTGTTGGATTGTGGTGTGCTCATCCTGATGTAAATCTTAGACCATTGATTAGACAAGCAATTCAAGTGCTTAATTTTGAAGTTTCTATGCCAAATCTTCCACCAAAGAGGCCTGTTGCAAATTATCATGCTCCTACACCACGTGTAAACTCAGTACAAGATTCTATTACCACAAGCCTTCAAGATATTGGTCGTTAA 1938 0.3535 MVFYTTFFFSLIFITFPVNSIHFQFSRFNPNDPNLFYQGSAAPLDRLVNFNINELYSCQIGRVLYSEKVLIWDSKTGQLTDFTTHYTFIINTQNHTSYGHGLAFFMVPFGFEFPLNSDGGFMGLFNTTTMDSPGNQMVHVEFDSYPNGEWGEKSEHVGINKNSIISSASVTWNASIHSGDSADVWISYNSTTKNLTVTWKYQATPDPQENTSLSLPIDLSKILPEWATVGFSAATSFVGEINYLLSWEFNSTLEKSGDSNIKETRLVVVIVTVSCVVLVLGALAIHALVWRKRKRSKKQKEESMHLTSMNNDLERGAGPRRFTYKELYLATNNFSKDRKLGQGGFGAVFKGYFADLDLQVAVKKISRGSKQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLSWSARHKITLGLASCLLYLHEEWERCVVHRDIKSSNVMLDSNFNVKLGDFGLAKLMDHELGPQTTGIAGTLGYLSPEYVSTGRASKESDVYSFGIVVLEITTGKKAIEVIKDIDGEKGMIDWVWDHYGKGELLVTMDENLKRDFDEKQIVCLMVVGLWCAHPDVNLRPLIRQAIQVLNFEVSMPNLPPKRPVANYHAPTPRVNSVQDSITTSLQDIGR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03001 645 SMART serkin_6 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03001 645 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 266 IPR013320 -
Tsu04g03001 645 ProSiteProfiles Protein kinase domain profile. 334 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03001 645 ProSitePatterns Protein kinases ATP-binding region signature. 340 364 IPR017441 GO:0005524
Tsu04g03001 645 Pfam Legume lectin domain 21 262 IPR001220 GO:0030246
Tsu04g03001 645 PANTHER - 18 645 - -
Tsu04g03001 645 Gene3D - 18 267 - -
Tsu04g03001 645 Pfam Protein kinase domain 334 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03001 645 CDD lectin_legume_LecRK_Arcelin_ConA 21 253 IPR001220 GO:0030246
Tsu04g03001 645 CDD STKc_IRAK 340 605 - -
Tsu04g03001 645 Gene3D Transferase(Phosphotransferase) domain 1 411 626 - -
Tsu04g03001 645 SUPERFAMILY Protein kinase-like (PK-like) 318 617 IPR011009 -
Tsu04g03001 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Tsu04g03001 645 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
Tsu04g03001 645 PANTHER PUTATIVE-RELATED 18 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03001 Tsu-Chr4 37027185 37029122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03001 5 623 Receptor kinase-like Gene Family AT5G10530 55.485 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g03001 Pkinase 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03001 - - mtr:MTR_8g067690 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01315 05 11940985 11941854 Tsu04g03001 04 37027185 37029122 PCT