Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03000 ATGACCATCAATAACTCATCAAGGACTCAAATTCTTTATATCACCAtcatttccttcttttttataGCTCAAAATGTAAACTCAGCTTCATTCACATTCTCCGATTTTGGGCCATACACAACCAACATTCAACTCGAAGGCGATTCCTTCATTTCGAACGGGTCCATCTATCCCACAGGTGCCGTCCCAACCAGCGCTGGTAGAGCCTCTTACGCTGGCCCCGTGCGTCTTTGGAACGCAGATAATGGTAAACTTGCAGCCTTCACTTCCGTCTTCTCTTTCGTAGTTGCACCAAATGGTCCCGGACTCTTTGGAGACGGAATTACTTTTTTCATCGCACCGTTCAATTCCCACATCCCTAAAAATTCGAGTGGTGGTTTCCTCGGACTAGTTAGCGCCGAAAGCGCTTTGAATTCCTACCAAAATCAAATTGTTGCGGTTGAATTCGATTCCTTCGGAGGGAATCCATGGGATCCCGAGTTTTCTCATATCGGAATTGATGTAAACTCTATTGCATCGGTAACAACATCGCCATGGAAAACCGGAAGTGTTGCCAATGGTTTCACTGCAGTTGCTATTGTGAACTATGAGCCATTGACAAAGAATTTAAGTGTGATTGTAACATACCCTGAAAGGTATGGTGTGAGTGAAACTTCAAGTAGTGCATCGTTTCTTATTGATTTGAGGAATGTGTTACCTGAATGGGTTAGAGTTGGATTCTCTGGTTCCACTGGACAATTAGTTGAATTGCATAAGGTTCTTTCTTGGGGTTTTAAGTCAAGCTTCTATTAA 792 0.423 MTINNSSRTQILYITIISFFFIAQNVNSASFTFSDFGPYTTNIQLEGDSFISNGSIYPTGAVPTSAGRASYAGPVRLWNADNGKLAAFTSVFSFVVAPNGPGLFGDGITFFIAPFNSHIPKNSSGGFLGLVSAESALNSYQNQIVAVEFDSFGGNPWDPEFSHIGIDVNSIASVTTSPWKTGSVANGFTAVAIVNYEPLTKNLSVIVTYPERYGVSETSSSASFLIDLRNVLPEWVRVGFSGSTGQLVELHKVLSWGFKSSFY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03000 263 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Tsu04g03000 263 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 11 261 - -
Tsu04g03000 263 CDD lectin_legume_LecRK_Arcelin_ConA 30 262 IPR001220 GO:0030246
Tsu04g03000 263 Gene3D - 26 263 - -
Tsu04g03000 263 PIRSF Plant_L_lectin 3 263 IPR016363 GO:0030246
Tsu04g03000 263 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 262 IPR013320 -
Tsu04g03000 263 Pfam Legume lectin domain 29 261 IPR001220 GO:0030246
Tsu04g03000 263 ProSitePatterns Legume lectins beta-chain signature. 145 151 IPR019825 -
Tsu04g03000 263 PANTHER LECTIN 11 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03000 Tsu-Chr4 37025474 37026265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03000 14 262 Receptor kinase-like Gene Family AT5G10530 37.838 5.88e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03000 - - aprc:113871630 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01314 05 11937465 11938316 Tsu04g03000 04 37025474 37026265 PCT
Tsu04g03000 04 37025474 37026265 Tsu05g01315 05 11940985 11941854 PCT