Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02990 ATGATGAATGGAGTGAGACAACACAACATGTTGGAATCAACAATAATGCAATCATTTCATCAGTATCAACACCTTGGAATGCAAGTTTCCATAGTGGAGACACTGCTGAGTCTCTCATATGAAATTGATTTGATCAAAATTTTACCTGAATGGATTACCGTTGGATTTTCGGCTGCAACTGGTTCATTTGGAGAATTAAATAATCTTTTGGCATGGGAATTTAATTCAACTTTGGATAAAAGTGATGATGATTTAGATTTACAAGTTGCAGTGAAGAAAATATCAAGAGGATCAAGACAAGGTAAGAAAGAGTATGTAACTGAAGTCAAAGTCATTAGTCAACTAAGACATAGGAATCTTGTGAAGCTCTTAGGTTGGTGTCATGACAAAGGTGAGTTTCTTCTCGTTTATGAGTTTATGCTAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGAACACCTCTTTCTTGGAGTGTAACGCACAAAATAGTTCTTGGATTAGCCTCTGGTTTGCTTTATCTACATGAAGAATGGGAGAGATGTGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGTGATTTTGGGTTGGCTAAATTAATGGATCACGAACTCGGGCCTCAAACAACTGGGCTGGCCGGAACATTCGGATACTTAGCTCCGGAATATGTGAGTACCGGTAGGGCTAGTAAAGAGTCGGATGTGTATAGTTTTGGGATAGTTGTCATGGAGATAACTACAGGAAAGAAAGCTACTGAagttataaaagaaaaagatgaggAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGTTACTAGTAGCCATGGATGAGAATTTGAAAAGGGGTTTCGAAGAGAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCATCGATTAGACAAGCGATTCAAGTGCTTAATTTTGATGTTTCTTTGCCAAATTTACCACCAAAGAGACCTGTTGCAACATATCATGCTTCTCTTACACCTTCTGTAAGTTCAGTTGAAGCTTCCATAACCAATAGCCTTCAAGATGGTCGTTGA 1125 0.3698 MMNGVRQHNMLESTIMQSFHQYQHLGMQVSIVETLLSLSYEIDLIKILPEWITVGFSAATGSFGELNNLLAWEFNSTLDKSDDDLDLQVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLVYEFMLNGSLDSHLFGKRTPLSWSVTHKIVLGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVMEITTGKKATEVIKEKDEEKGMIEWVWDHYGRGELLVAMDENLKRGFEEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFDVSLPNLPPKRPVATYHASLTPSVSSVEASITNSLQDGR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02990 374 Gene3D - 12 78 - -
Tsu04g02990 374 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 82 IPR013320 -
Tsu04g02990 374 SMART serkin_6 52 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02990 374 Gene3D Transferase(Phosphotransferase) domain 1 141 355 - -
Tsu04g02990 374 Pfam Legume lectin domain 34 82 IPR001220 GO:0030246
Tsu04g02990 374 ProSiteProfiles Protein kinase domain profile. 52 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02990 374 Pfam Protein kinase domain 86 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02990 374 PANTHER - 85 370 - -
Tsu04g02990 374 PANTHER - 32 82 - -
Tsu04g02990 374 Gene3D Phosphorylase Kinase; domain 1 79 140 - -
Tsu04g02990 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Tsu04g02990 374 SUPERFAMILY Protein kinase-like (PK-like) 81 346 IPR011009 -
Tsu04g02990 374 PANTHER PUTATIVE-RELATED 85 370 - -
Tsu04g02990 374 PANTHER PUTATIVE-RELATED 32 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02990 Tsu-Chr4 36859192 36860699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02990 37 82 Receptor kinase-like Gene Family AT5G10530 56.522 2.38e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g02990 Pkinase 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02990 - - mtr:MTR_8g067630 525.013