Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02988 ATGCATTTAAGATCAATGAATGATGACCTTGAAAGAGGAACAGGGCCGAGACGGTTTACCTATAAAGAACTTGATTTCGCTACCCGTAACTTCTCTAGTGATAGAAAGTTAGGTCAAGGTGGATTCAGAGCTGTTTATAAAGGTTACTTTTTTGATCTAGATTTATCAGTTGCTGTGAAGAAAATATCAAGAGGATCAAGACAAGGTAAGAAAGAGTATGTAACTGAAGTTAAAGTCACTAGTCAACTAAGACATAGGAATCTTGTGATGCTGTTAGGTTGGTGTCATGACAAAGGTGAGTTTCTACTTGTTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGGGCACCTCTTCCTTGGAGTGTAATAGCTATTGGCTTAGCCTCTAGTGTGCTTTATCTACATGAAGAGTGGGAGAGGTGTGTGGTACATAGGGATATCAAATCAAGCAATGTTATGCTAGATTCTAGTTTCAATGTTAAGCTTGGTGACTTTGGGTTGACTAAGCTTATGGACCATGAGATTGGTCCCCAAACAACGGTGGTTGCCGGAACCTTAGGATATTTGGCTCCAGAATATATAAGTACCGGTAAGTCTAGCAAAGAGTCAGATGTTTATAGTTTTGGAGTTGTTGCTTTGGAGATCGCACTCGGAAGGAAAGCTGTTGAAGTTATGAGTGACAAAGATGGAGAGAAGGGATTGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAACTATTTGAGGCCATGGATGGGAATTTACAAAAGAATTTTGATGAGAAACAAGTAGAATGTTTGATGATCGTTGGTCTTTGGTCTATTCATCCTGATGTAAATATAAGACCATCGATTAAACAAGTTATTCAAGTGCTTAATTTTAAGGCTGGCCTTCCAAATCTTCCACCAAAGAGGCCTGTTGCAACATATCACACTCCTCCACCGCTTGTAAGCTCGGTAGGAGTTTCCATAACCACAAGCCTTCAAGATGGTCGTTAA 1017 0.3943 MHLRSMNDDLERGTGPRRFTYKELDFATRNFSSDRKLGQGGFRAVYKGYFFDLDLSVAVKKISRGSRQGKKEYVTEVKVTSQLRHRNLVMLLGWCHDKGEFLLVYEFMPNGSLDSHLFGKRAPLPWSVIAIGLASSVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLTKLMDHEIGPQTTVVAGTLGYLAPEYISTGKSSKESDVYSFGVVALEIALGRKAVEVMSDKDGEKGLIEWVWDHYGRGELFEAMDGNLQKNFDEKQVECLMIVGLWSIHPDVNIRPSIKQVIQVLNFKAGLPNLPPKRPVATYHTPPPLVSSVGVSITTSLQDGR 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02988 338 CDD STKc_IRAK 37 299 - -
Tsu04g02988 338 PANTHER PUTATIVE-RELATED 4 327 - -
Tsu04g02988 338 Gene3D Transferase(Phosphotransferase) domain 1 108 319 - -
Tsu04g02988 338 Gene3D Phosphorylase Kinase; domain 1 16 107 - -
Tsu04g02988 338 ProSiteProfiles Protein kinase domain profile. 31 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02988 338 PIRSF ILK 11 301 - -
Tsu04g02988 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Tsu04g02988 338 SMART serkin_6 31 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02988 338 Pfam Protein kinase domain 32 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02988 338 SUPERFAMILY Protein kinase-like (PK-like) 15 320 IPR011009 -
Tsu04g02988 338 PANTHER - 4 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02988 Tsu-Chr4 36852367 36853383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02988 2 317 Receptor kinase-like Gene Family AT5G10530 66.978 1.06e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g02988 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02988 - - mtr:MTR_8g067690 579.711