Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02981 ATGTCTCCGCCACTGCTGGTTCCTGAAGAGGAACGGCAGAGCAACCCCTCAACGGTAGCATCTGCATGTCCACAATCCTTGGACTGTTTTTCGCAAACTGGAGTTGGATTGAAAGAACGCAATTACCTAGGATTGTCAGATTGCTCATCGGTGGACAGTTCTACTGTCCCGAGCTTGTCTGATGAGAAAAAAGTGAACCTAAACTTGAAAGCTACAGAGTTAAGGCTGGGACTTCCTGGATCCCAGTCGCCTGAAAGGGATCCAGATCTTTTTACATTGAGCTCGACAAAACTTGACGAGAAACCACTTTTTCCTTTGCTTCCCACGAAAGATGGAATCTGCTCATTGTCCCAGAAGAATGTGGTTTCAGGCAACAAAAGAGGTTTCGCTGACACAATAGATGTGTTCCCTGAGGCGAAATATAATGGTAATGCGCGTGTAAACATAATGCTATCGCCAAGACCTTCTGGAGCTCAGCCTACTACAGTTAAAGAAAAACCAATCAAGGTGTTACAAGAGAGCCCTTGTGCAGCAAATGGAACTGGTGCTCCTACCAATGGTAGTGCACCGGCCGCTAAAGCACAAGTTGTTGGTTGGCCACCTATTAGATCATTTAGGAAAAACTCATTGGCCAACGCTTCAAAGAACAACGATGAAGTGGATGGAAAACCTGGTCCAGCTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATCTAAGGAAGGTAGATCTACGAAACTATACAACGTACCAGGAACTGTCTTCTGATCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCACATGGAGCTCCGGGAAGAGAAATGTTGAGCGAGAGCAAGTTGAAGGACTTCCTGCATGGTTCTGAATATGTGGTCACTTATGAAGATAAGGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGACATGTTCACTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGAGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1047 0.4556 MSPPLLVPEEERQSNPSTVASACPQSLDCFSQTGVGLKERNYLGLSDCSSVDSSTVPSLSDEKKVNLNLKATELRLGLPGSQSPERDPDLFTLSSTKLDEKPLFPLLPTKDGICSLSQKNVVSGNKRGFADTIDVFPEAKYNGNARVNIMLSPRPSGAQPTTVKEKPIKVLQESPCAANGTGAPTNGSAPAAKAQVVGWPPIRSFRKNSLANASKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02981 348 PANTHER AUXIN-INDUCED PROTEIN 2 341 - -
Tsu04g02981 348 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g02981 348 Pfam AUX/IAA family 72 339 IPR033389 -
Tsu04g02981 348 SUPERFAMILY CAD & PB1 domains 226 329 - -
Tsu04g02981 348 Gene3D - 225 342 - -
Tsu04g02981 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Tsu04g02981 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 341 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02981 Tsu-Chr4 36686824 36691805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02981 232 338 B3 DNA Binding Superfamily AT4G23980 30.841 3.34e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu04g02981 AUX_IAA 2.8e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02981 K14484 - gmx:100500373 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01286 05 11691091 11694969 Tsu04g02981 04 36686824 36691805 PCT