Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02960 ATGGCCGAATACCGCTCACCACCGTTAAATATCTGGACAGACGACAACTCATCCGTCATGGAAGCTTTCATGAGCACAGCTGACCTCTCCAATCTATGGCTTCCAACACCACACTCCTCGGCATCAACAACCACACCCGGACCTGACACAACTCGACAACAgccaccacaacaacaacagcagccTCTTTTCAATCAAGAGACTCTCCAACACCGTCTTCAAGCTTTAATTGAAGGCGCAAAACAGAATTGGACCTACGCCATCTTCTGGCAGCCGTCTTATGACTATTCTACCGCCACCCCACTCCTCGGCTGGGGTGACGGATACTACAAAGGCGAAGATGATAAAGAAAAAGCCAAAAGAGTTACTAGAACAATTACGCTTGAAGACCAAGAGCATCGCAAACAAGTTCTACGTGAACTTAATGCTTTAATCTCTGGTTCTTCCGGCTCTGATGATGTTGTTGACGAAGATGTCACCGACACTGAGTGGTTTTTTCTCATGTCAATGACACAATCTTTCGTCAACAACAGTGGATCATTGAGCCAGGCTTATTTTAATTCAACTCCGGTGTGGATCGCCGGAGTTGATAGGCTTTCTGGTTCCAACTGTGGAAGAGCCCGTCAAGCACATGGCCACGGGCTTCAAACCTTTGTATGTATACCAACACCGTCTTCAAACGGCGTCGTTGAGCTTGGTTCTACGGAGGTTATTCCATATAGCGCTGAGTTAATGGAAAAGGTTCGTGTTCTGTTTAATTTCAACAATCCTGAAGGTGGATCGTGTCCGTTGAATTCCGTTGTAACTGGTCAAAGTGAGAACGATCCTTCCTCTGTTTGGCTCAACGATCTCTCTGGTTCTGCTCCGGTTGAAATTCGAGATTCCGTTAATCCGGCTACTGCCGTTAACGCAACCGTTGGTTCTTCTGGTACTTTAACGGCAACACCAAACGCCGCCGTTCAACGTCAGAACCAGAGTTTCTTCCCTAAGGAACTGAATTTTTCGAATTCACTGAAACCAGAATCTGGAGAGATTTTGAATTTCGGTGAAAGTAGAAAGAGTTCTTACAGCGCCGGTAACGGTAATTTCTTTACCGGTCAGTCACAGTTTGCTGCCGGTgaagaaaacagaaaaagaagGTCTCCAGTGTCTAGAAGCAGTATTGACGACGGTATGCTTTCGTTCACTTCCGGCGTACTTTTACCGGCTTCAAATATGAAAtccggtggtggtggtggaggtggAGATTCCGATAATTCGGATCTAGATGTTTCCGTTGTAAAGGAAGCTGATAGCAGCAGAGTACTGGAACAAGAGAAGCGGCCACGGAAGCGAGGGCGAAAACCGGCCAACGGAAGAGAAGAACCATTGAATCACGTTGAAGCAGAAAGACAGAGAAGAGAAAAGCTGAATCAAAGATTCTACGCTCTACGCGCCGTGGTGCCAAATGTTTCGAAAATGGATAAAGCATCACTCCTAGGCGATGCAATTTCTTACATAAATGAATTGAAATCAAAGCTTCAAGGACTTGAATCATCAAAAGGTGAATTAGAGAAACAATTAGATACAACCAAAAAGGAACTTGAACTTGCAACcaaaaatccaaatccaaatccaatttCATtagatgaagaaattgaaaaaacaagtTCTAAATTGAGTGGTTTGGAAATAGATGTGAAGATTATGGGTTGGGATGCAGTGATTAGGATTCAATGTAGTAAGAAGAATCATCCTGCGGCGAAGTTGATGGCGGCGTTAAAAGAATTGGATCTTGAAGTGAATCATGCTAGTGTGTCTGTAGTGAAAGATTTGATGATTCAACAAGCTTCGGTTAAAATGGGGAGTCGATTTTACACTAAGGAACAACTTTCATCTGCTCTTTCTTCCAAAATTGGTGATGCACAATGA 1911 0.4155 MAEYRSPPLNIWTDDNSSVMEAFMSTADLSNLWLPTPHSSASTTTPGPDTTRQQPPQQQQQPLFNQETLQHRLQALIEGAKQNWTYAIFWQPSYDYSTATPLLGWGDGYYKGEDDKEKAKRVTRTITLEDQEHRKQVLRELNALISGSSGSDDVVDEDVTDTEWFFLMSMTQSFVNNSGSLSQAYFNSTPVWIAGVDRLSGSNCGRARQAHGHGLQTFVCIPTPSSNGVVELGSTEVIPYSAELMEKVRVLFNFNNPEGGSCPLNSVVTGQSENDPSSVWLNDLSGSAPVEIRDSVNPATAVNATVGSSGTLTATPNAAVQRQNQSFFPKELNFSNSLKPESGEILNFGESRKSSYSAGNGNFFTGQSQFAAGEENRKRRSPVSRSSIDDGMLSFTSGVLLPASNMKSGGGGGGGDSDNSDLDVSVVKEADSSRVLEQEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKGELEKQLDTTKKELELATKNPNPNPISLDEEIEKTSSKLSGLEIDVKIMGWDAVIRIQCSKKNHPAAKLMAALKELDLEVNHASVSVVKDLMIQQASVKMGSRFYTKEQLSSALSSKIGDAQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02960 636 MobiDBLite consensus disorder prediction 34 61 - -
Tsu04g02960 636 MobiDBLite consensus disorder prediction 427 464 - -
Tsu04g02960 636 SMART finulus 460 509 IPR011598 GO:0046983
Tsu04g02960 636 MobiDBLite consensus disorder prediction 369 390 - -
Tsu04g02960 636 PANTHER MYC 10 633 IPR045084 GO:0003700|GO:0006355
Tsu04g02960 636 CDD bHLH_AtAIB_like 451 527 - -
Tsu04g02960 636 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 523 IPR036638 GO:0046983
Tsu04g02960 636 Coils Coil 500 534 - -
Tsu04g02960 636 PANTHER TRANSCRIPTION FACTOR MYC2 10 633 - -
Tsu04g02960 636 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 69 252 IPR025610 -
Tsu04g02960 636 Gene3D - 446 534 IPR036638 GO:0046983
Tsu04g02960 636 Pfam Helix-loop-helix DNA-binding domain 458 503 IPR011598 GO:0046983
Tsu04g02960 636 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02960 Tsu-Chr4 36280173 36282819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02960 1 633 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.553 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02960 bHLH-MYC_N 7.2e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02960 K13422 - gmx:100790854 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02960 04 36280173 36282819 Tsu04g02960 04 36280173 36282819 ECH