Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02957 ATGGCTTCCGATGGTTTCACTGATAAGAATCTCGTGTTCAGAAAACTCAAGATGAAGTCAGAGAATAAGATGTGTTTTGATTGTAATACGAAGAATCCAACATGGGCTTCTGTTACGTATGGGATTTTTCTGTGCATTGATTGCTCTGCTGTTCATCGAAGTCTCGGTGTTCATGTTAGCTTCGTGAGATCTACAAACTTAGACTCATGGAGTCCCGAGCAACTAAAAATAATGAGTTTTGGAGGAAACAGCCGTGCACAGATTTTCTTTAAGCAACATGGTTGGACCGACGGTGGTAAAATAGAAGCAAAGTATACATCCAGAGCTGCAGAGTTGTACAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTTCTAATGGACTTTCTAATGTCATGACTAATGAGGTactgaaagaaaataatttggAGAAGGCAGAAAAGCCTGAGAGCACATGTTCTTCACCTAGAGCTTCACATACAGTAGTATCAAATAATTTGAGGAAGCCTATTGGTGGTAAAAAGCCTGGGAAGAGTGGGGGACTTGGTGCTCGTAAGCTCAATAAAAAGCCAAATGAGTCTCTCTATGATCAGAAACCTGAAGAACCACCTGCTCCAGTTCCATCCACGACAAACAACAACTTGTCTACCAGGCCATCTTTGACTTCTCGGTTTGAGTATGTAGATAATGTTCAATCATCTGAGTTGGATTCTGGAGGTTCAAATGTATACAATCACGCTTCTGCACCAAAGTCATCAAATTTCTTTGCAGACTTTGGAATGGACGGTGGTTTCCCTAAGAAATTTGGATCAAACACCTCAAAAGTGCAAATTGAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCCATTTCGTCATCTCAATTTTTTGGAGACCAGAACAAGGCGAGAGATGCTGATACTCGAGCAACTTTGTCAAAGTTTTCAAGTTCATCTGCCATCTCCAGTGCTGATCTTTTTGGCGACTCCGGAGATTCCACCATTGATCTTGCTGCTAGCGATCTCATCAATCGATTACATTTTCAGGCACAACAGGATATCTCTTCCCTCAAGAACATTGCTGGAGAGACTGGGAAAAAACTCAGCTCCTTGGCCTCCTCCTTGATGACCGATCTTCAGGACCGAATTCTCTAA 1209 0.4152 MASDGFTDKNLVFRKLKMKSENKMCFDCNTKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWSPEQLKIMSFGGNSRAQIFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEGGLPSSPVASQSSNGLSNVMTNEVLKENNLEKAEKPESTCSSPRASHTVVSNNLRKPIGGKKPGKSGGLGARKLNKKPNESLYDQKPEEPPAPVPSTTNNNLSTRPSLTSRFEYVDNVQSSELDSGGSNVYNHASAPKSSNFFADFGMDGGFPKKFGSNTSKVQIEESDEARKKFSNAKSISSSQFFGDQNKARDADTRATLSKFSSSSAISSADLFGDSGDSTIDLAASDLINRLHFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02957 402 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Tsu04g02957 402 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Tsu04g02957 402 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Tsu04g02957 402 MobiDBLite consensus disorder prediction 167 181 - -
Tsu04g02957 402 MobiDBLite consensus disorder prediction 157 235 - -
Tsu04g02957 402 CDD ArfGap_ArfGap2_3_like 8 123 - -
Tsu04g02957 402 SUPERFAMILY ArfGap/RecO-like zinc finger 12 124 IPR037278 -
Tsu04g02957 402 Gene3D Arf GTPase activating protein 3 141 IPR038508 -
Tsu04g02957 402 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Tsu04g02957 402 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 402 - -
Tsu04g02957 402 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Tsu04g02957 402 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 402 - -
Tsu04g02957 402 Pfam Putative GTPase activating protein for Arf 13 106 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02957 Tsu-Chr4 36199025 36204878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02957 13 84 C2H2 Transcription Factor Family AT3G07940 46.575 2.97e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02957 K12493 K11855 gmx:100789796 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02957 04 36199025 36204878 Tsu04g02957 04 36199025 36204878 ECH