Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02956 ATGGCTTCCGATAGCTTCACCGACAAGAACGCCGTATTCAGAAAACTCAAAACCAAATCCGAAAAtaagACTTGTTTTGATTGCAATGCGAAGAATCCAACTTGGGCTTCTGTAACGTATGGGATCTTCCTTTGCATTGATTGCTCTGCTGTTCATCGGAGTCTCGGTGTTCACGTCAGCTTTGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTCAAAATGATGAGTTTTGGAGGAAACAGTAGGGCACAAGTTTTCTTTAGGCAGCATGGTTGGAACGGCGATGGTAAAGTTGAGGCAAAGTATACTTCCAGAGCTGCAGATTTGTATAAGCAACTGCTTTCAAAGGAAGTTGCTAAAAGTGTGACTGAGGAGGCTGCCTTGTCTTCATCACCTGCTGCTTCTTTGCAATCTGCCCAAGGGGAAGGTGCTAATGGACTTCCTGATGTTAGGACAAATGAAGTACCGAATGAAAAACCTGTAGAGAAGCCAGAAAAGATCGAGAGCACTTCTTCACCTAGAGCATATACTGCAGTTTCCAATAATTTGAAGAAGCCTATTGGAGCCAAAAAAACTGTTAAGAGTGGGGGTCTCGGAGCCCGTAAGCTTACTAGAAAGCCAAGTGAGTCGCTCTACGAGCAGAAGCCCCAAGAACCACCTGCTCCagtttcatcaacaacaaatatcAACGTGCCTTCTGGGCCATCTCTAACATCTCGGTTTGAGTATACAGAAACTGACCAATCATCTGAGTCGAATTCTGGAGCTTCTAATGTAATCAGTCATGTATCTGTACCAAAGTCATCAAGCTTCTTTTCTGACTTTGGAATGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCAAAAGTGCAAATCCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAGCAAGGCCGGAGATGTGGATGCTCAAGCTACTTTATCAAAGTTTTCTGGTTCATCTTCCATTTCCAGTGCCGATCTTTTTGGTGACTCAAGAGATAACTCTGTTGATCTTGCTGCTAGTGATCTTATCAATCGAATATCTTTCCAGGCACAACAGGATATCTCTTCCCTCAAGAACATTGCAGGAGAGACTGGGAAAAAACTCACCTCCTTGGCATCCTCCTTGATGACAGATCTTCAGGACCGAATTCTCTGA 1221 0.4275 MASDSFTDKNAVFRKLKTKSENKTCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLKMMSFGGNSRAQVFFRQHGWNGDGKVEAKYTSRAADLYKQLLSKEVAKSVTEEAALSSSPAASLQSAQGEGANGLPDVRTNEVPNEKPVEKPEKIESTSSPRAYTAVSNNLKKPIGAKKTVKSGGLGARKLTRKPSESLYEQKPQEPPAPVSSTTNINVPSGPSLTSRFEYTETDQSSESNSGASNVISHVSVPKSSSFFSDFGMDSGFPKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQSKAGDVDAQATLSKFSGSSSISSADLFGDSRDNSVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02956 406 MobiDBLite consensus disorder prediction 222 261 - -
Tsu04g02956 406 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 406 - -
Tsu04g02956 406 MobiDBLite consensus disorder prediction 132 261 - -
Tsu04g02956 406 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 406 - -
Tsu04g02956 406 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Tsu04g02956 406 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Tsu04g02956 406 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Tsu04g02956 406 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Tsu04g02956 406 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Tsu04g02956 406 Gene3D Arf GTPase activating protein 1 138 IPR038508 -
Tsu04g02956 406 CDD ArfGap_ArfGap2_3_like 8 123 - -
Tsu04g02956 406 Pfam Putative GTPase activating protein for Arf 12 111 IPR001164 GO:0005096
Tsu04g02956 406 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Tsu04g02956 406 MobiDBLite consensus disorder prediction 158 172 - -
Tsu04g02956 406 MobiDBLite consensus disorder prediction 285 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02956 Tsu-Chr4 36134026 36140417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02956 13 90 C2H2 Transcription Factor Family AT4G21160 45.570 4.22e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02956 K12493 K11855 gmx:100785169 608.601