Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02954 ATGGCGTTCGAGAATCAAGACACAGTCCGTGAAATTAAGCCAAAAAACAGAAGAATCATGGGTGCTGGAGGAcctgatgatgaagaaaatagGTGGCCACCATGGTTGAAACCTCTGCTTAAAGAACGTTTCTTTGTTCAATGCAAGTTGCATGCTGATTCACATAAGAGTGAGTGTAATATGTATTGTTTGGATTGTATGAATGGTGCTCTTTGCTCTCTCTGTCTCAATTATCACAAAGATCATCGTGCTATTCAGATAAGGAGGTCTTCATACCATGATGTGATTAGGGTGAATGAGATTCAGAAAGTATTGGACATATCAGGAGTTCAAACCTATATCATCAACAGTGCAAGAGTTGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGTAAAGGTGTCACCAACACTTGTGAAGTCTGCGAGCGCAGCCTTCTTGATTCCTTTCGATTCTGTTCTCTTGGCTGCAAGATTGTTGGAACTTCAATGAATTTCCAGAAAAAGAACAAGTTAGCTGCAATGATATCAGACTCAGAGGATTCATACAGCAGCAGTTGCAGCCATGGAAAACTGAAGAACAACATCAAAGTGCAAAGCTTCACTCCTTCAACACCACCACCAACTTCAGTTAATTACAGAACAGCCAAAAGAAGAAAGGGAATTCCACATCGTGCACCAATGGGAGGACTAGTCTTGCAATACTAA 708 0.4068 MAFENQDTVREIKPKNRRIMGAGGPDDEENRWPPWLKPLLKERFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLNYHKDHRAIQIRRSSYHDVIRVNEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSMNFQKKNKLAAMISDSEDSYSSSCSHGKLKNNIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVLQY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02954 235 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 231 - -
Tsu04g02954 235 Pfam PLATZ transcription factor 88 159 IPR006734 -
Tsu04g02954 235 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02954 Tsu-Chr4 35979667 35982464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Tsu04g02954 PLATZ 2.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02954 - - mtr:MTR_8g066820 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02954 04 35979667 35982464 Tsu04g02954 04 35979667 35982464 ECH
Tsu05g01261 05 11391817 11394256 Tsu04g02954 04 35979667 35982464 PCT