Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02939 ATGGCTCGTCCGGATTATCCGACAACATGGATTCCCTACATAAACAGCAAAGATTGTTCTCAAGGATTTTGTAGCATGTATTGTCCACAATGGTGCTACATAGTTTATgctcctccaccaccaccaactTTTCAATACCCTGATGATGACTCAAAACCATATTTTTCTCCTCTTGTTATTGCAATCATGGGAATTTTAGCCACAGCTTTTCTACTAATAACTTACTATACTCTAATAACCAAATACTGTGGTCATAGAGAATCTTCACAAAGAAACAGCACTGACCAAGTTGAtgaaatcaatcaaaatcaccGCGAAAATTGTCAAGTTTCAACCTTTGGTTTAGATGATGCTCAAATAAAATCCATTGCAGTTTTTAAGTACAAAAAAGGAGACAATTTTTTTGCTGGTGCTGTCACTGATTGTTCTGTTTGTTTAAGTGAATTTCAAGATGATGAAAGTGTTAGACTTTTACCGACATGTAACCATGTGTTTCATCTTCCTTGTATCGATACATGGCTTAAATCTAACTCATCTTGTCCTCTATGTCGTTCGAATATACTCACTTTGAATGCTTCAACACTTCATGCTCCAATTCCAGCTACATTTATAGAACTTCCTTCAAGAAATGAAATTTCATTAGAAAGTGAACAAATACTTGTGGAAGAAGCAATGATTCATCATGGTAGAGTTGATTCGAAGACGCCTTCATTGCGCGCTTATAGTGATTTATGTAATTTACAAGGAAGAGAAAGAGTAATTGAAATAAGAGATGAAGTTTGTGAATCCATTGGAAGATCAGTTTCTATGGATCATTCATTTCAAAATGGTTTTTCAATAAGTGATGTGttgaatatgaatgaagatgaagattctGATGAAGAAGGTTGTTCAATGGATGTTAGTTCATCAAAGAGATTACAAGGAGAAAGTAGTAATAAGTCAAGGTACAAAAGAAGGGTGTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCATTTTCTAATGGTAAATTTTCACTCAGTAGAATTGATAGAGGAAAAAGGCAGGGAATTTTGcctgtttga 1071 0.3212 MARPDYPTTWIPYINSKDCSQGFCSMYCPQWCYIVYAPPPPPTFQYPDDDSKPYFSPLVIAIMGILATAFLLITYYTLITKYCGHRESSQRNSTDQVDEINQNHRENCQVSTFGLDDAQIKSIAVFKYKKGDNFFAGAVTDCSVCLSEFQDDESVRLLPTCNHVFHLPCIDTWLKSNSSCPLCRSNILTLNASTLHAPIPATFIELPSRNEISLESEQILVEEAMIHHGRVDSKTPSLRAYSDLCNLQGRERVIEIRDEVCESIGRSVSMDHSFQNGFSISDVLNMNEDEDSDEEGCSMDVSSSKRLQGESSNKSRYKRRVLHCVMSPIAMKRSFSNGKFSLSRIDRGKRQGILPV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02939 356 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 346 IPR044675 -
Tsu04g02939 356 SMART ring_2 142 183 IPR001841 -
Tsu04g02939 356 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 346 - -
Tsu04g02939 356 Pfam Ring finger domain 141 184 IPR001841 -
Tsu04g02939 356 SUPERFAMILY RING/U-box 125 189 - -
Tsu04g02939 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 191 IPR013083 -
Tsu04g02939 356 MobiDBLite consensus disorder prediction 288 314 - -
Tsu04g02939 356 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02939 Tsu-Chr4 35723695 35724765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02939 7 349 C3H Transcription Factor Family AT5G17600 37.433 2.65e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02939 - - vun:114176645 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02939 04 35723695 35724765 Tsu04g02939 04 35723695 35724765 ECH
Tsu05g01258 05 11350018 11351173 Tsu04g02939 04 35723695 35724765 PCT