Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02936 ATGAAGGTTGAAGATTCTAGTAATACAATGGCTTTGGAAACACTTTCATCATGTAAtgagttttcaaatttcattatCTATGACACAATTTCTGCAACTCCATTTAGTAGTAGTAATACTACAGAGTACTCTGGTTTCTTGGAAAATACAATGAACAACTATGAGGAAAATATTCATCATGAGCCTACAATATTTGATCATAGTAACTTTTCAGTGATGAATAACAGAAAAAGGCAATTAATGGAACAAGAAGAAACAATGAAGGAGatgaataataatagtaataatcaaGTGGTGCAGAGGAAAAAGAGGAGAAGAAAACCAAGAGTTTgtaagaacaaagaagaagccGAGACACAAAGAATCACACACATTACTGTTGAAAGAAACCGTCGAAAGCAAATGAATGAACATCTTGCTGTACTTCGTTCTCTCATGCCTGAATCTTATGTTCAAAGggGTGACCAAGCCTCAATAGTTGGTGGTGCCATAGAGTTTGTAAAAGAGCTAGAACATCTCTTACAATCACTTGAAGCTAGAAAGCTACAACTATTACAACAAGAATTAGCACAACAACAAAGCAATAATATTGAAGATCAAACAACCAATGtttcaaaacaaataatgaaaCCACCTTTTGCACAATTTTTTGTGTATCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACATTAATCGAGACTCATGCAAACCTTAGAATTCTCACTAGGACAAGACCAGGACAATTAACTAAATTAGTTGCTGGTTTTCAATCACTTTTCCTCACAATTCTACATCTCAATGTCACTACTATACAACCTTTGGTCTTCTACTCTATCAGTGCCAAGGTATGCAATTCATCCTAA 909 0.3267 MKVEDSSNTMALETLSSCNEFSNFIIYDTISATPFSSSNTTEYSGFLENTMNNYEENIHHEPTIFDHSNFSVMNNRKRQLMEQEETMKEMNNNSNNQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLQQELAQQQSNNIEDQTTNVSKQIMKPPFAQFFVYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQSLFLTILHLNVTTIQPLVFYSISAKVCNSS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02936 302 CDD bHLH_AtFAMA_like 122 181 - -
Tsu04g02936 302 Gene3D - 110 200 IPR036638 GO:0046983
Tsu04g02936 302 PANTHER TRANSCRIPTION FACTOR BHLH71 10 299 - -
Tsu04g02936 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 190 IPR036638 GO:0046983
Tsu04g02936 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Tsu04g02936 302 Coils Coil 73 97 - -
Tsu04g02936 302 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Tsu04g02936 302 SMART finulus 125 176 IPR011598 GO:0046983
Tsu04g02936 302 MobiDBLite consensus disorder prediction 89 117 - -
Tsu04g02936 302 PANTHER MAX DIMERIZATION, MAD 10 299 - -
Tsu04g02936 302 Coils Coil 167 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02936 Tsu-Chr4 35678558 35680714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02936 111 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.614 1.66e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02936 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02936 - - pvu:PHAVU_003G284500g 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02936 04 35678558 35680714 Tsu04g02936 04 35678558 35680714 ECH