Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02933 ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCTCCGGCGGTGGCGGAGGTGGTGGTGCTGATAGCTGGTCAACCGACCAAGCTGATTGGGCAACGGAAGATGAATATCGTTACTGGAACGGAAATGAACCCGGCGAAACCACGCCATCGTCAAACTCAAATTCTGAGAGACAACAACGGTCAGGAAGTGAGCCGCCGAGCAAGAAAACAAGAAGCAATTCACAAGACGGCGGATCGAATCGGGCCAAAGCAATCGGGAAAATGTTCTTTAAGACGAAACTGTGTTGCAAGTTTCGTGTGGGAACTTGTCCTTATATAACAAACTGTAATTTTGCTCACAGTGTTGAGGAGCTTCGGCGGCCGCCGGCAAATTGGCAGGAGATTGTGGCTGCACATGAGGAAGAGAGAAATGTGCTTGAGCAGCCTAGGGAAGAGTTTCAGATTCCGACCGTCGGTTCCAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGTAGACATTgtaagaaattttatactgaAGAAGGTTGTCCTTATGGTGATAGTTGTACTTTTCTTCATGATGAGCAATCCAAGAATCGAGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGgttatggtggtggtggtggtggtgttgttgGTGGAGGTGGTAGTATtggtagtggtggtggtggtggtagtaGTAGTggcgttgttgttgttgcagcTGGTGCAGCGGCCGGGAATGGACCTAATTTGAAGCCTTCAAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGTTATTGTCCCTTCGGTAACAAATGTCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAAGCAGAGACACTGCTTCTGCTGTTGCGTCCGACTCCAAACAGGGAGTATCATCAAAAAATCACGCCGATAATGTGGTTGCATCAACTCCTCCTATTGCTCAATCAGATGTTTATCATATTGGAGTCCCTTCACAGAGGCCTTCCATTGTGAGTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGTGATTGGATTGATGACTTCGAATAG 1137 0.423 MDYNRDGNVVQIITSGGGGGGGADSWSTDQADWATEDEYRYWNGNEPGETTPSSNSNSERQQRSGSEPPSKKTRSNSQDGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGVVGGGGSIGSGGGGGSSSGVVVVAAGAAAGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAVASDSKQGVSSKNHADNVVASTPPIAQSDVYHIGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02933 378 MobiDBLite consensus disorder prediction 46 83 - -
Tsu04g02933 378 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Tsu04g02933 378 SUPERFAMILY CCCH zinc finger 165 196 IPR036855 GO:0046872
Tsu04g02933 378 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Tsu04g02933 378 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Tsu04g02933 378 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Tsu04g02933 378 MobiDBLite consensus disorder prediction 1 84 - -
Tsu04g02933 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 283 IPR000571 GO:0046872
Tsu04g02933 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Tsu04g02933 378 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Tsu04g02933 378 SUPERFAMILY CCCH zinc finger 254 288 IPR036855 GO:0046872
Tsu04g02933 378 MobiDBLite consensus disorder prediction 342 363 - -
Tsu04g02933 378 Gene3D - 160 207 - -
Tsu04g02933 378 SUPERFAMILY CCCH zinc finger 90 123 IPR036855 GO:0046872
Tsu04g02933 378 MobiDBLite consensus disorder prediction 301 323 - -
Tsu04g02933 378 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 209 IPR045877 GO:0003729
Tsu04g02933 378 PANTHER CCCH ZINC FINGER/TIS11-RELATED 242 375 IPR045877 GO:0003729
Tsu04g02933 378 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 242 375 - -
Tsu04g02933 378 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 14 209 - -
Tsu04g02933 378 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Tsu04g02933 378 MobiDBLite consensus disorder prediction 303 323 - -
Tsu04g02933 378 Gene3D - 252 289 - -
Tsu04g02933 378 Gene3D - 89 123 - -
Tsu04g02933 378 Pfam CCCH-type zinc finger 172 194 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02933 Tsu-Chr4 35659958 35663404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02933 259 287 C3H Transcription Factor Family AT1G68200 62.069 3.25e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g02933 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02933 - - gmx:100788208 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02933 04 35659958 35663404 Tsu04g02933 04 35659958 35663404 ECH