Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02928 ATGTCAAGACGAGGTTCAAGGGGGAAAAAGGTTCCATTGTTCAAGCTTTTCTCATTTGCTGATTTCTATGATTATGTCTTGATGGCCGTTGGATCTATTGGTGCATGCATTCATGGTGCATCTGTGCCTATTTTCTTTATCTTCTTTGGAAAAATTATTAATGTCATAGGTTTGGCTTACCTTTATCCTAAAGAAGCTACTCACCAAGTTGCCAAGTATGCGTTGGATTTCCTGTATCTAAGTATAGTAATATTGTTTTCATCATGGGCAGAGGTAGCTTGTTGGATGCATACTGGGGAACGTCAAGTAGCAAAGATGAGAATGGCATATTTAAGGTCAATGTTGAATCAAGATATAACTCTTTTTGATGCTGAATCATCAACAGGAGATGTTATTTCTTCTATTACAACTGATATCATTGTTGTTCAGGAAGCATTATCTGAGAAGGTTGGGAACTTTATGCACTTTGTAAGCCGATTCATAGCGGGCTTTATCATCGGCTTTTTCAGAGTTTGGCAGATCAGTATAGTGACACTTGCTATTGTTCCTTTGATTGCTATTGCTGGAGGTCTTTATGCATATGTTACATTTGGGCTCATTGCAAAAGTTCGTAAATCATATCTAAGGGCAGGTGATATCGCTCAGGAGGTGATAGGAAATGTCAGAACCGTACAAGCATTTGGAGGAGAACAAAGAGCGGTGATATCATACAAAGTGGCTTTGAGGAACACATATAAGAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTTCTTTTTCTATCATGGGCTCTCCTTGTTTGGTTCACCAGCATTATTGTTCACAAGGGCATTGCCAATGGTGGAGTGGCTTTCACTACCATGCTCAATGTGGTTATCTCTGGCCTGTCACTTGGGCAGGCAACACCAGACATTTCTGCATTTATCAGAGCAAAGACAGCAGCTTATCCCATTTTCAAGATGATAGAGAGAGACACAGTTAGCAAAAATAGCTCAAAAGCTTgtcgaaaattaaaaaaaatagatggtCACATACAATTTATTAATATCTGTTTCAATTACCCATCTCGCCCAGATGTTGATATTTTCAACAATCTTTCTCTTGAGATTCCTTCAGGTAAAATTTTGGCACTTGTAGGAGGGAGTGGTTCAGGAAAAAGTACAATTATATCGTTAATTGAGCGTTTCTATGAACCAATTTCTGGTCAAATTCTGTTAGATAAGAATGATATAAAAGAACTTGATCTAAAATGGCTTAGACATCAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTCGCTACAAGCATAAGGGAGAACATATTGTATGGTAAAAATGATGCCACTCCTGAAGAACTAAACCGTGCTTTGGAACTTTCTGATGCTCACTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGAATACAATTATCAGGGGGACAAAAGCAGAGAATTGCAATATCTCGTGCTATAGTTAAAAATCCATCAATCCTTTTATTAGATGAAGCAACTAGCGCTCTAGATGCGGAGTCTGAGAAAAGTGTACAAGAAGCTCTTGATCGTGTCATGATTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCAACCATTAGGAATGCAGATATGATAGCTGTTGTTGAACGAGGGAGCATTGTGGAAACTGGAAATCATGAAGAGCTCATTTCCAACTCAAATAGTGTATATGTATCTCTTGTTCAAGGCCACCCTTCTCCAGATCCTAGCTTGGGACAGTCATCAAGCATAAAGAACTCGGTAGAAACATCCCATACATCAACTGTTGGTGGTAGTTTTCGTGGTAGTTTTCGTTCAGATACTACTAGCAATGCATGTGCTGATGAAGCAGGAAGTGTTGAAAAGTCGAGGCATGTTTCATTAATAAGATTATATTCAATGGTTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTAGCTGCTTTTACTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGATAGCACACAACGTGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGCGCAGCAATTGTAGCTATCACTGCCTATACAATTGAACATCTTTCTTTTGGAATCATGGGGGAACGACTTACCCTTCGTGTCAGGGAAATTATGATTTCTGCTATTTTGAAGAATGAAATCGGTTGGTTTGATGATACAAGAAACACAAGTACTATGCTTTCATCACGTTTAGAGACTGATGCAACTTTGTTAAAAACTGTAGTGGTGGACCGTTCTACAATTCTCTTGCAGAATGTTGGCCTAGTGGTTACTTCATTTATTATTGCATTCTTTTTGAACTGGAGGATAACACTTGTTGTCTTGGCAACATATCCTTTGATAATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCGTATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGGTCTTTATGCTGATGAGCTTGTTGAGCCTTCCAAACGTTCATTCAGACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCATAGCCTTGTGGTATGGATCTTTGTTGGTTGAAAAGGATCTTTCTACCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATAGTAACAGCATTGGCTATGGGGGAAACTTTGGCACTTGCACCGGACCTTTTGAAAGGGAATCAAAtggtttcatcaatttttgaTATGATAGATAGAAAGTCAGGAATAATGTATAATGTTGGAGAAGAGTTGATGACAGTGgaaggaacaattgagctaagAAGGATCAATTTTAGCTATCCCTCAAGACCAaacattgttatttttaatgatttcaATCTAATAGTTCCTTCAAGGAAGAGTCTTGCCTTGGTGGGGCACAGTGGTTCTGGTAAAAGCTCAATAATCTCACTTATACTTAGATTTTATGATCCAACATCTGGGAAGGTGATGATCGATGGAAAAGATATCAAGAAAATGGATTTGAAATCCCTAAGGAAGCATATTGGTCTAGTACAACAAGAACCAGCACTATTTGCAACATCAATTTATAAGAACATTTTGTATGGAAAAGAAGAAGCATCAGAATCAGAAGTGATTGAAGCAGCTAAACTAGCCAATGCTCATAACTTCATAAGTGCACTTCCTGAAGGCTACAAAACCAAAGCAGGTGAGAGAGGAGTTCAACTATCTGGTGGCCAAAAACAAAGGGTAGCCATTGCAAGAGCTGTTTTGAGAAACCCCAAAATATTACTTCTGGATGAAGCCACAAGTGCACTCGATGTAGAGTCGGAGCGCGTTGTACAACAAGCTTTAGACAATTTGATGCAAAATAGAACAACAATTATTGTGGCACATAGGCTATCTACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGGAAGATAATTGAGCAAGGTACTCATTCAAGTCTTATGGAAAATACAAATGGAGCTTATTTCAAATTAGCCAGCTTACAACAACAACCACATGTACATAATACATGA 3684 0.3776 MSRRGSRGKKVPLFKLFSFADFYDYVLMAVGSIGACIHGASVPIFFIFFGKIINVIGLAYLYPKEATHQVAKYALDFLYLSIVILFSSWAEVACWMHTGERQVAKMRMAYLRSMLNQDITLFDAESSTGDVISSITTDIIVVQEALSEKVGNFMHFVSRFIAGFIIGFFRVWQISIVTLAIVPLIAIAGGLYAYVTFGLIAKVRKSYLRAGDIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKGIANGGVAFTTMLNVVISGLSLGQATPDISAFIRAKTAAYPIFKMIERDTVSKNSSKACRKLKKIDGHIQFINICFNYPSRPDVDIFNNLSLEIPSGKILALVGGSGSGKSTIISLIERFYEPISGQILLDKNDIKELDLKWLRHQIGLVNQEPALFATSIRENILYGKNDATPEELNRALELSDAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADMIAVVERGSIVETGNHEELISNSNSVYVSLVQGHPSPDPSLGQSSSIKNSVETSHTSTVGGSFRGSFRSDTTSNACADEAGSVEKSRHVSLIRLYSMVGPYWSYGVFGTLAAFTTGALMPLFALGISHALVSYYMDWDSTQREVKKIAFLFCGAAIVAITAYTIEHLSFGIMGERLTLRVREIMISAILKNEIGWFDDTRNTSTMLSSRLETDATLLKTVVVDRSTILLQNVGLVVTSFIIAFFLNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYADELVEPSKRSFRRGQIAGIFYGISQFFIFSSYGIALWYGSLLVEKDLSTFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIMYNVGEELMTVEGTIELRRINFSYPSRPNIVIFNDFNLIVPSRKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKKMDLKSLRKHIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLANAHNFISALPEGYKTKAGERGVQLSGGQKQRVAIARAVLRNPKILLLDEATSALDVESERVVQQALDNLMQNRTTIIVAHRLSTIRNADQISVLQDGKIIEQGTHSSLMENTNGAYFKLASLQQQPHVHNT 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02928 1227 MobiDBLite consensus disorder prediction 590 630 - -
Tsu04g02928 1227 Gene3D ABC transporter type 1, transmembrane domain 15 950 IPR036640 GO:0005524|GO:0016021
Tsu04g02928 1227 SUPERFAMILY ABC transporter transmembrane region 16 322 IPR036640 GO:0005524|GO:0016021
Tsu04g02928 1227 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524
Tsu04g02928 1227 SUPERFAMILY ABC transporter transmembrane region 649 962 IPR036640 GO:0005524|GO:0016021
Tsu04g02928 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 983 1217 IPR003439 GO:0005524
Tsu04g02928 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
Tsu04g02928 1227 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 8 1222 - -
Tsu04g02928 1227 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 8 1222 IPR039421 -
Tsu04g02928 1227 SMART AAA_5 1008 1194 IPR003593 -
Tsu04g02928 1227 SMART AAA_5 379 571 IPR003593 -
Tsu04g02928 1227 ProSitePatterns ABC transporters family signature. 1120 1134 IPR017871 GO:0005524
Tsu04g02928 1227 Gene3D - 972 1226 IPR027417 -
Tsu04g02928 1227 Pfam ABC transporter transmembrane region 663 934 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g02928 1227 Pfam ABC transporter transmembrane region 33 301 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g02928 1227 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 325 - -
Tsu04g02928 1227 Pfam ABC transporter 371 519 IPR003439 GO:0005524
Tsu04g02928 1227 CDD ABC_MTABC3_MDL1_MDL2 352 588 - -
Tsu04g02928 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 662 948 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g02928 1227 CDD ABC_MTABC3_MDL1_MDL2 981 1219 - -
Tsu04g02928 1227 CDD ABC_6TM_Pgp_ABCB1_D2_like 651 966 - -
Tsu04g02928 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 317 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g02928 1227 Pfam ABC transporter 1000 1148 IPR003439 GO:0005524
Tsu04g02928 1227 Gene3D - 342 605 IPR027417 -
Tsu04g02928 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1219 IPR027417 -
Tsu04g02928 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 587 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02928 Tsu-Chr4 35590456 35609049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02928 9 1225 Calmodulin-binding Proteins AT2G36910 49.880 0.0 1204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02928 K05658 - gmx:100819045 1918.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02928 04 35590456 35609049 Tsu04g02928 04 35590456 35609049 ECH