Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02919 ATGTATGTCAAGGTGACTAAGATTTCTGAAATCTCTGGTGGAAAGATTGATTTCCAGTTGAGGGTAAGGGTGATCAATCTTTGGACTACCCCAGATCGTACGAATCCTCAGGATGAAGGAGTTGTTCACATGATTTTCATGGACAAAGAGTGTGGAAGAATACATGCAACTATTAGGAAAGACTTGATCTCTAAATTTAGGGATAGTGTTGAGGATGGATCTGCATATGTTTTGGAGAGGTTTATGGTGGCTAAGAATGATGCTACTTTCAGAAGTACTCCCCACAAACACAAACTTAATTTCATGCGTGGAACTAAAGTATTCAAAGTCAAGGCTCTTGAAATACCACCAAACCATTTTGAGTTTATGTCTTTCCATGACATTTTAGCATCCACCAAGGATGATCAATTTCTTGatgttaTTGGTcatgttgttaaaaaaaatgtcatgaaAGAAACTGAGAAAAATGGGAAGATAAGTAAGGTTATGGATGCCACACTTGAAGATTTGGAAGGAAATAGGGTGCACTGTACTTTGTGGGATGATTTTGCTGTTAAGATGGAACAATTTTTGGACACTCATGATTCCTCTTTACCTGTGATAATCATACTCCAACTGTGCAAGCTTAAAATGTATCTTGGTGCCATGAGAATTTCACTTGAAGGAAGTGTAACTTTAATATTTGGTGTTACAGAAATGTCAAACAATCGAATCgttcattttaaaatttctccTTTCATAGGCGTTCGTACAACCTTGATCTCACCTACAACAACTAAATACAAGGCTTTTTATCAAGCTTGA 804 0.352 MYVKVTKISEISGGKIDFQLRVRVINLWTTPDRTNPQDEGVVHMIFMDKECGRIHATIRKDLISKFRDSVEDGSAYVLERFMVAKNDATFRSTPHKHKLNFMRGTKVFKVKALEIPPNHFEFMSFHDILASTKDDQFLDVIGHVVKKNVMKETEKNGKISKVMDATLEDLEGNRVHCTLWDDFAVKMEQFLDTHDSSLPVIIILQLCKLKMYLGAMRISLEGSVTLIFGVTEMSNNRIVHFKISPFIGVRTTLISPTTTKYKAFYQA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02919 267 Pfam Domain of unknown function DUF223 44 136 IPR003871 -
Tsu04g02919 267 PANTHER REPLICATION FACTOR A 1, RFA1 31 239 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu04g02919 267 CDD RPA1_DBD_B_like 139 228 - -
Tsu04g02919 267 Gene3D - 3 109 IPR012340 -
Tsu04g02919 267 CDD RPA1_DBD_A_like 20 107 - -
Tsu04g02919 267 Gene3D - 113 261 IPR012340 -
Tsu04g02919 267 PANTHER BNAC07G49340D PROTEIN 31 239 - -
Tsu04g02919 267 SUPERFAMILY Nucleic acid-binding proteins 4 110 IPR012340 -
Tsu04g02919 267 SUPERFAMILY Nucleic acid-binding proteins 119 226 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02919 Tsu-Chr4 35492401 35493560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02919 3 226 Core DNA Replication Machinery Family AT4G19130 24.017 4.59e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02919 - - mtr:MTR_1g052715 229.565