Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02918 ATGAGCTTCCAGGACATCGAAGCTGGCCGGCCGTTCGGTTCTAGACGTGGACCGATTAACGGGAAACAAGACCCGACACAAGCGGTTGCCGCCGGGATTTTTCAGATCAACACCGCCGTTTCGACGTTTCAGAGACTCGTCAATACCCTTGGAACTCCCAAAGATACCCCTGAGCTCCGTGAAAAACTTCACAAGACAAGACAGCATATTGGGCAGTTGGTGAAGGATACATCAGCCAAGCTTAAACAAGCTAGTGACATTGATCACCATGCCGATGTTAATgCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCGCAACGTCTTTCAGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCTTCCGTCGAGCTATACAGCTAGTGAAATGAATGTCGGTTCTGACAAGACACCAGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGGCAGGAGGTATTGTTCTTAGATAATGAGATTGCCTTCAATGAGGCAATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAagttaatgaaattttcaaagaTCTCGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGTTCCAACATTGAGAACTCCCATGCAGCAACTGCACAAGCAAGATCTCAACTTGCAAAAGCTTCCAAAACACAAAGATCAAATTCATCTTTgGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATTTTGATCATAGTTCTTGCTGCTTAG 822 0.4416 MSFQDIEAGRPFGSRRGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRQHIGQLVKDTSAKLKQASDIDHHADVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTASEMNVGSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQARSQLAKASKTQRSNSSLACLLLVIFGIVLLILIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02918 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Tsu04g02918 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Tsu04g02918 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Tsu04g02918 273 CDD SNARE_Qa 200 241 - -
Tsu04g02918 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Tsu04g02918 273 Gene3D - 20 133 - -
Tsu04g02918 273 Gene3D - 174 273 - -
Tsu04g02918 273 SMART tSNARE_6 175 242 IPR000727 -
Tsu04g02918 273 MobiDBLite consensus disorder prediction 1 24 - -
Tsu04g02918 273 Pfam SNARE domain 216 268 IPR000727 -
Tsu04g02918 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Tsu04g02918 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Tsu04g02918 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu04g02918 273 CDD SynN 23 148 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02918 Tsu-Chr4 35463154 35467985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02918 1 261 SNARE and Associated Proteins AT5G46860 77.011 1.22e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02918 - K08488 gsj:114391232 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01237 05 11135381 11138861 Tsu04g02918 04 35463154 35467985 PCT