Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02871 ATGAGTTGGAACCTTGCTAGTTCTATGATGAAGAGAGATGGTATTTTGCCAAATGGACATGGGATGTTTCCTCAAAGTTTGTCTCAGTTTCCAACTGATTCTGGATTTATTGATGCTGCAAGAATGTCGTGTTTTAGTGCCGGGGGTTTCTGTGATATGGTGAACTCATGTGGGATTCCTCAATCTATGGCTTTACACATGTCTCGGTCTGTTGAGCATCTCGGTAGTGATGGAAGTCCACTTCAAAATGATAGAAGAAATGATTGTCCTGTAATGTCTCCGGATGAAGGGAAACAAGCTCATGGAGGGTGTTCTAATGAGGCTGATAGAGCTGAATCAAGTggtgatgatggtgttggtAATGGTAGCCATGATGATTCCCAAATGTTGGATTCTACAAGTGGGGAACCTTCTATTAAAGGTTTAAATtcgaagaaaaggaaaagaagtaGGAAGgATGGTGATAGTGATAAAGCCATTAGAAATGTTGAGCTTCCAAGGGAAACTGCAAAAGACAACTGCGAGAGTAGAAAAAAGGGAAAGCAGCTAACAACTTCAACAACCAAGGCTTCTGGTAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCTGCCTAATGAGGGATACGTACATGTCAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGCGAGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAACAAgGTCACTGGCAAGGCGGTGATGCTAGATGAAATCATTAATTATGTACAGTCTCTTCAACAACAAGTTGAGTTTTTATCGATGAAACTTGCAACAGTTAATCCACATGTGGATTTTAATATGGAACAGCTGCTTCATAAAGATATTCTTCAACATCGGCCAGGTCCATCATCTACTTTGGGGTTTCTCACAGAAATGCCAATGGCTTTTCCTCCATTATTACATCCATCTCAACAGGGACTAATTCGTCCAACTCTACCGAACTTGGCAAATTCATCACATTTACTCGGTCTTACTGTTCAACCACAGTCAGCACCTTTGACCGGAGAATTCAAAGAGCCAAATCAGGTTAATCCATTGCAAGAAGCCAATCCCTGA 1125 0.4044 MSWNLASSMMKRDGILPNGHGMFPQSLSQFPTDSGFIDAARMSCFSAGGFCDMVNSCGIPQSMALHMSRSVEHLGSDGSPLQNDRRNDCPVMSPDEGKQAHGGCSNEADRAESSGDDGVGNGSHDDSQMLDSTSGEPSIKGLNSKKRKRSRKDGDSDKAIRNVELPRETAKDNCESRKKGKQLTTSTTKASGKNAKQGSQASDLPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPHVDFNMEQLLHKDILQHRPGPSSTLGFLTEMPMAFPPLLHPSQQGLIRPTLPNLANSSHLLGLTVQPQSAPLTGEFKEPNQVNPLQEANP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02871 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 268 IPR011598 GO:0046983
Tsu04g02871 374 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 69 IPR024097 GO:0006355
Tsu04g02871 374 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 368 IPR024097 GO:0006355
Tsu04g02871 374 Pfam Helix-loop-helix DNA-binding domain 221 269 IPR011598 GO:0046983
Tsu04g02871 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 287 IPR036638 GO:0046983
Tsu04g02871 374 MobiDBLite consensus disorder prediction 148 179 - -
Tsu04g02871 374 CDD bHLH_AtBPE_like 208 293 - -
Tsu04g02871 374 MobiDBLite consensus disorder prediction 180 204 - -
Tsu04g02871 374 MobiDBLite consensus disorder prediction 125 140 - -
Tsu04g02871 374 MobiDBLite consensus disorder prediction 354 374 - -
Tsu04g02871 374 MobiDBLite consensus disorder prediction 71 206 - -
Tsu04g02871 374 PANTHER BHLH TRANSCRIPTION FACTOR 1 69 - -
Tsu04g02871 374 PANTHER BHLH TRANSCRIPTION FACTOR 73 368 - -
Tsu04g02871 374 Gene3D - 215 288 IPR036638 GO:0046983
Tsu04g02871 374 SMART finulus 224 274 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02871 Tsu-Chr4 34645364 34649110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02871 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 47.606 2.31e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02871 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02871 - - mtr:MTR_8g065740 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02871 04 34645364 34649110 Tsu04g02871 04 34645364 34649110 ECH