Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02851 ATGAGTGATATTGGTGTTGTTCAATTGCTTAGACCCTTTGTTGAGACTAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGACCCAACTAGGTTTATTGAGTGGATGGGTTGTTGCTGTTGTGGTGGAAACATGGATCTCAAAGAGGAAATGGATGATGAAGAATATCATTTGGCTCCCATTTGTAGGGATACCCTTTTTCATCACTCAGTTAGAACAAAGACTTGTGAAGCTATTGCCAAGCTTCCTTTTGCAATGTCTCTATATTCAGGTGTCCATGCAGAGGTTGCAATATCCCAACAACCAAGATGGATTATCCATGAGGACTCAATTGGAACCCAAGTTTTGATCCCTATTATTGGTGGTCTTGTTGAGCTTTTCACTGCAAAGCTGATCCCAAAAGATATAAATATCATGGAGTTAATATCAGCACACTGTTTTGTCTCTATAAACCAAGAAGCCATATCTGCACAGAGCCCCACCAACATGAACTTCGATGAGCGTTGTTACACTTTAAATGGAGAAAACCATAGCAGTTCTAATCCTGGCATTGAAGGACCCTCCAatggatctaatccttcaaatGAGCACCTATCATTCGATTCAAACTTTGGTTGCTTGATTCCATATGAATTTCTGACTCAACCAGTTAAAATATCTCCTGTACCAAAAGTTAAAAGCCGCAAATACAATAAAACTTCAGCGGAATGTCAGAGTAGTTTGAGTTTCCATTGTGGCAATAGGgaagaagataaagaagaaatttCCTGGAGGGAGCCTAAAAAGGAAGTGTATCATGCTAAAAATCTTATCACAGAGAGAAAAAGGaggaacaaaatcaaaacagggCTTTTTACTCTAAGGTCTCTTGTCCCTAATATAACCAAGATGGATAGAGCATCAATTCTCGGGGATGCGATTGAGTATATAAAGGAATTGCAATGGAAAGAAATAGAACTTCAAGATGAGGTCAAGGCTTTAGAAGTTGAGGACTGTGAGAAGAACACACTACAATTGAGGGTGCAAAGAGACAAAGAACAAGGAACCAGAAATCTACCTCTCACAGAGATTATGCAAAGTTCTTCTGATTCCACGAAAAATACAGAGATGAAGTTGCAAGTAGAAGTGAATCTTATTGGCAAAACAAATTTCATGATTAAGTTGTGCTGTGAGCATAAGCAAGGTGGATTTTCAAGGTTGATGGAAGCTATAGATTCATTTGGGCTCAATGTGGTAAATGCAAACATGACCACATTTCATGGAAAAGTCCTGAACATTCTAATGGTTGAGGCAACTGCGCAGGATATTTCCGCAACAAAACTCAGAGAGTATCTGATACAGCAAACTGGTCGATGA 1362 0.3744 MSDIGVVQLLRPFVETKAWDYVVVWKYGNDPTRFIEWMGCCCCGGNMDLKEEMDDEEYHLAPICRDTLFHHSVRTKTCEAIAKLPFAMSLYSGVHAEVAISQQPRWIIHEDSIGTQVLIPIIGGLVELFTAKLIPKDINIMELISAHCFVSINQEAISAQSPTNMNFDERCYTLNGENHSSSNPGIEGPSNGSNPSNEHLSFDSNFGCLIPYEFLTQPVKISPVPKVKSRKYNKTSAECQSSLSFHCGNREEDKEEISWREPKKEVYHAKNLITERKRRNKIKTGLFTLRSLVPNITKMDRASILGDAIEYIKELQWKEIELQDEVKALEVEDCEKNTLQLRVQRDKEQGTRNLPLTEIMQSSSDSTKNTEMKLQVEVNLIGKTNFMIKLCCEHKQGGFSRLMEAIDSFGLNVVNANMTTFHGKVLNILMVEATAQDISATKLREYLIQQTGR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02851 453 Gene3D - 259 333 IPR036638 GO:0046983
Tsu04g02851 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 331 IPR036638 GO:0046983
Tsu04g02851 453 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 59 451 - -
Tsu04g02851 453 CDD ACT_UUR-ACR-like 387 449 - -
Tsu04g02851 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Tsu04g02851 453 SUPERFAMILY ACT-like 386 444 IPR045865 -
Tsu04g02851 453 SMART finulus 272 321 IPR011598 GO:0046983
Tsu04g02851 453 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 145 IPR025610 -
Tsu04g02851 453 MobiDBLite consensus disorder prediction 178 197 - -
Tsu04g02851 453 Pfam Helix-loop-helix DNA-binding domain 273 316 IPR011598 GO:0046983
Tsu04g02851 453 PANTHER TRANSCRIPTION FACTOR BHLH90 59 451 - -
Tsu04g02851 453 ProSiteProfiles ACT domain profile. 387 453 IPR002912 -
Tsu04g02851 453 Coils Coil 312 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02851 Tsu-Chr4 34418267 34421065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02851 247 451 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 39.352 2.18e-34 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02851 bHLH-MYC_N 1.5e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02851 - - mtr:MTR_8g064700 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02851 04 34418267 34421065 Tsu04g02851 04 34418267 34421065 ECH