Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02850 ATGGCTATAAAGATCAACAAAATCAAGAAAGAAGAAGGTGACTCTTCAAAAGTTGTTCCTAAGAAACGAAAGCCAGATGTGAATGTAGCTCCACCGCCTAATTCCGAACCACCGGAAAATTCTCCCGCAGAGTTTCCACCGCCACCGTCAGAACCACCGTCTAAGTCTCCTACGCCGCCTGAAGCTTCACCGCCATTGGAATCACCACCACCGCCACCATCAAAGAAAACACAATCACCACCGCCAAAGCAAACACAATCATCACCACCGCCACTTTCTCCTCCACCAAATTCGCCGCCTCCACCACCTCCGTCACCGTCACCATCTCCACCACCACCCTCCCTTCCACCACCGCAACTGTCACCACCACCATTGCGCAATAATAATTCTTCTTCACCCCCTCCTAATTTGCCACGTAAACATCCGTCGTCTCCATCGCAGTTTCAATCCCCACCTCCCGCGGGGAAGAagtcttcttcatcttcttcatcatcgtCTTCTAAACCCTCGAAAGattcaccttcttcttcttcttcttcttcttcagcccCGAATGGTTCACCGCAAACCTTCAATGTAAAATCAAGAGATTCTTCTCCGCCTACCTCCTCGCCTGCCGAAATAGTTGGTTACACCCTTGCCGGAGTTTTTGTTGTCGCTTTAGTTGCCGTAGCTGTTATTCTTGTGTTTAGGAGGAAGAAAACGAAAGGAGATGTGTATGGTGCACCACCCTATATACCACCACATCATGGTATTGCTTTTCCAGTTAAACCAAGTGCTAATGGACATTACTATGTACAGCAACCTCCGTTTCAGAATATCTATAGCAATGGGAACGTTGGAGGAAGCACCATGAATCATTCAGGAGGAGGTCATTTAGATTCAGCACAGCCCATAAGTGCTCAAATAGTTTTTAGTTATGAGATGGTAATGGAAATAACCAATGCATTTTCACATCAAAATGTGATAGGGCAAGGAGGATTTGGGTGTGTTTACAAGGGTAGGCTGCGGGACGGAAAAGAAGTGGCGGTCAAGACTCTTAAGGCTGGTAGTGGGCAGGGAGATAGGGAATTTAGGGCTGAAGTTGAGATCATTAGCCGTGTTCATCATCGACATTTGGTATCGTTGGTTGGTTATTGCATATCAGAGCAGCAAAGAGTGCTTATCTATGAGTTCCTCCCAAATGGAAATCTTCATAATCACTTGCATGGAAGGGGAATGCCAGTGTTGGGGTGGACCAATAGGCTGAAGATAGCTATCGGTGCTGCAAAGGGCTTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATACACAGAGATATTAAATCCGCCAACATACTTTTGGATGAAGCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAGCTGATGCTGCTAATACACATGTATCAACTAGGGTTATGGGTACATTTGGATACATGGCTCCAGAGTATGCAACAAGTGGGAAATTAACAGATAGATCAGATGTTTTCTCATTTGGTGTTGTCCTGCTTGAGCTTGTAACTGGAAGAAAACCAGTTGATGAAACTATGCCTTTGGGTGATGAGAGTTTGGTTGAGTGGGCTCGTCCACAACTTATCCATGCATTTGAGACACGTGAGTTTGGTGAACTAATAGATCCAAGACTAGAAAAACACTACGTGGAGAGTGAAATGTTCAGAATGATAGAGGCAGCTGCAGCTTGTATTCGACACTCAGCACCTAAACGGCCTCGTATGTCTCAGGTGGTAAGAGCTTTGGACACTGGAGCTCAATCATCTGATTTATCAAATGGGGTGAAATATGGTCAGAGCAGAGTTTATGATTCTGGCCAATATGACAAAGAGATCATGCTATTCAGGATGATGGGCAACGGCAGCTATGGCGATTCTTCTGATTATGATATATACAGTGCAGAATCCGGTCATTCAAGAGAGAATTCAAGACCACGGCATGCATGGGTGCATAGTGGTTCGAGTACCGAATCAGAATCTAGAGCTTTCAATAACCATAGATGCAGTAGTACAGAATGA 2043 0.441 MAIKINKIKKEEGDSSKVVPKKRKPDVNVAPPPNSEPPENSPAEFPPPPSEPPSKSPTPPEASPPLESPPPPPSKKTQSPPPKQTQSSPPPLSPPPNSPPPPPPSPSPSPPPPSLPPPQLSPPPLRNNNSSSPPPNLPRKHPSSPSQFQSPPPAGKKSSSSSSSSSSKPSKDSPSSSSSSSSAPNGSPQTFNVKSRDSSPPTSSPAEIVGYTLAGVFVVALVAVAVILVFRRKKTKGDVYGAPPYIPPHHGIAFPVKPSANGHYYVQQPPFQNIYSNGNVGGSTMNHSGGGHLDSAQPISAQIVFSYEMVMEITNAFSHQNVIGQGGFGCVYKGRLRDGKEVAVKTLKAGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRVLIYEFLPNGNLHNHLHGRGMPVLGWTNRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDEAFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDETMPLGDESLVEWARPQLIHAFETREFGELIDPRLEKHYVESEMFRMIEAAAACIRHSAPKRPRMSQVVRALDTGAQSSDLSNGVKYGQSRVYDSGQYDKEIMLFRMMGNGSYGDSSDYDIYSAESGHSRENSRPRHAWVHSGSSTESESRAFNNHRCSSTE 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02850 680 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Tsu04g02850 680 ProSiteProfiles Protein kinase domain profile. 317 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02850 680 MobiDBLite consensus disorder prediction 656 680 - -
Tsu04g02850 680 MobiDBLite consensus disorder prediction 643 680 - -
Tsu04g02850 680 Gene3D Transferase(Phosphotransferase) domain 1 393 610 - -
Tsu04g02850 680 Gene3D Phosphorylase Kinase; domain 1 289 392 - -
Tsu04g02850 680 MobiDBLite consensus disorder prediction 26 149 - -
Tsu04g02850 680 Pfam Protein tyrosine and serine/threonine kinase 320 590 IPR001245 GO:0004672|GO:0006468
Tsu04g02850 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Tsu04g02850 680 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 38 659 - -
Tsu04g02850 680 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 38 659 - -
Tsu04g02850 680 MobiDBLite consensus disorder prediction 1 204 - -
Tsu04g02850 680 SUPERFAMILY Protein kinase-like (PK-like) 297 590 IPR011009 -
Tsu04g02850 680 SMART serkin_6 317 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02850 680 MobiDBLite consensus disorder prediction 150 204 - -
Tsu04g02850 680 MobiDBLite consensus disorder prediction 1 24 - -
Tsu04g02850 680 CDD STKc_IRAK 323 591 - -
Tsu04g02850 680 PRINTS Proline rich extensin signature 86 103 - -
Tsu04g02850 680 PRINTS Proline rich extensin signature 69 85 - -
Tsu04g02850 680 PRINTS Proline rich extensin signature 48 69 - -
Tsu04g02850 680 PRINTS Proline rich extensin signature 17 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02850 Tsu-Chr4 34412983 34417585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02850 208 652 Trihelix Transcription Factor Family AT1G70460 61.874 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tsu04g02850 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02850 - - lang:109330554 663.299