Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02848 ATGGATGATAGCAAAGCATCCTCATATTATTGTTGGGACTCCTGGACGTGTCTTGGATCACCTAAAAAATACCAAGGATTTTCTCTCAGTAAACTAAAATACTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGAATGATCCCTCGGGAACGGAGGACTTTCCTTTTTTCTGCTACGATGACGAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGattGAAGCATCAACCAAGTATTCTACCGTGGATACACTGAAGCAACAATTTCGCTTCTTGCCAGCAAATCATAAGGTATTTGTTGTCCCATTCCAAAAAATTTATTCTCTGTCATCTCCCCCCATTATTTGTGTTTGTAGGTGTGCCATTGCCATAAAAATATCTCTAATTTATATTATGTCTTTCTTTTGTCAGCCAAAGCGACTTGGAGCCTTGAATAAGTTCAAATCCGGGGATTGCAATATTCTCCTTTGTACCGACGTAGCTAGTAGGGGACTGGATATTCCAGCAGTAGACATGGTGATTAACTATGACATTCCCACAAACTCCAAAGTAAGATGTGCTATGACTGCTCGGGCAGAGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTAGAGTGGTACATTCAGATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTAGAAGAGCGTGTTAGTGAGGCCAGAAGATTAGCTGCAACGAAAATGAAGGAAAGTGGAGGGAAGAAGAAACGGAGGGGCGAAGGAGATTCGGGGGAGGATGAAGATATTGACAAATACTTTGGCCTAAAAGACAGAAAATCGTCTAAGaagtttaaaagaaaatga 918 0.4096 MDDSKASSYYCWDSWTCLGSPKKYQGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQFRFLPANHKVFVVPFQKIYSLSSPPIICVCRCAIAIKISLIYIMSFFCQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKVRCAMTARAERSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEARRLAATKMKESGGKKKRRGEGDSGEDEDIDKYFGLKDRKSSKKFKRK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02848 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 225 IPR027417 -
Tsu04g02848 305 SMART helicmild6 132 213 IPR001650 -
Tsu04g02848 305 Gene3D - 15 99 IPR027417 -
Tsu04g02848 305 Pfam Helicase conserved C-terminal domain 142 211 IPR001650 -
Tsu04g02848 305 Pfam DEAD/DEAH box helicase 25 79 IPR011545 GO:0003676|GO:0005524
Tsu04g02848 305 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 90 IPR014001 -
Tsu04g02848 305 MobiDBLite consensus disorder prediction 262 290 - -
Tsu04g02848 305 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 36 44 IPR000629 -
Tsu04g02848 305 CDD SF2_C_DEAD 102 219 - -
Tsu04g02848 305 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 101 249 IPR001650 -
Tsu04g02848 305 PANTHER BNAC02G41920D PROTEIN 25 292 - -
Tsu04g02848 305 Gene3D - 100 249 IPR027417 -
Tsu04g02848 305 PANTHER RNA HELICASE 25 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02848 Tsu-Chr4 34396714 34403030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02848 32 242 Eukaryotic Initiation Factors Gene Family AT3G19760 25.893 1.69e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02848 K14777 - gmx:100775796 339.347