Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02841 ATGTCACTCTCCACCACAACTTCTCACCTCACCATTCTCCCTTCACTTCCTTCAACTTCACAACTTTCTCATAGATTTTCCTTCACTTTCCcagaaaaaagaaaccaaaaaacTTCTCATACAActcttttctcttcttcatcAAGGTCTACTACATTCTTGGTGAAGTCTCAGACTACTAGTGTATCTTCTTCTGAGGCTGTGAAAGTGACTTCTGTTCCTTCTGAAATGAAGGCTTGGGTGTATGGAGAATATGGTGGTGTtgatgttttgaaatttgattCAAGTGTTGCTGTTCCTGATGTTAAGGAGGATCAGGTTCTTGTTAAGGTTGTTGCTGCTGCTCTTAATCCTGTTGATGGTAAAAGAAGGCAGGGAAAATTTAAGGCTACTGATTCTCCACTTCCGaCTGTTCCTGGCTATGATGTTGCTGGGATTGTAGTAAAAGTTGGTAGTGAAGTAAAAGAATTGAAAGTGGGTGATGAAGTGTATGGTGATGTAAATGAGAAAGCACTTGAAGGACCTAAACAGTTTGGGTCTCTAGCTGAATACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTAAGAATTTGGACTTTGTTCAAGCTGCTTCTCTTCCTCTTGCAATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTTCTGGTAAATCTATTCTTATTCTTAATGGTTCTGGTGGTGTTGGAAGCTTAGTCATTCAGCTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTAGCAGCCACTTCAAGCACTAGAAATTTGGAGCTGTTGAAAAGCCTTGGAGCCGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGCTTTAAAAGAAGGTGGTAGTGTAGTAGCATTAACAGGTGCTGTTACACCACCTGGATTCAGATTTGTAGTAACTTCTAATGGAGCTGTTCTTAAGAAACTTAACCCATATTTAGAGAGTGGAAAGGTGAAGCCAATTATAGATCCCAAAGGTCCATTCACCTTTGCTCAAGTTGCTGAAGCATTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATCCcttga 1158 0.3843 MSLSTTTSHLTILPSLPSTSQLSHRFSFTFPEKRNQKTSHTTLFSSSSRSTTFLVKSQTTSVSSSEAVKVTSVPSEMKAWVYGEYGGVDVLKFDSSVAVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGIVVKVGSEVKELKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPKNLDFVQAASLPLAIETAYEGLERTGFSSGKSILILNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKALKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFTFAQVAEAFSYIETNKATGKVVIFPIP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02841 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 199 322 IPR036291 -
Tsu04g02841 385 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 39 385 IPR044626 GO:0016628
Tsu04g02841 385 CDD MDR_like_2 77 381 - -
Tsu04g02841 385 Pfam Alcohol dehydrogenase GroES-like domain 105 167 IPR013154 -
Tsu04g02841 385 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 39 385 - -
Tsu04g02841 385 SUPERFAMILY GroES-like 74 231 IPR011032 -
Tsu04g02841 385 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 226 247 IPR002364 GO:0008270|GO:0016491
Tsu04g02841 385 Pfam Zinc-binding dehydrogenase 270 381 - -
Tsu04g02841 385 SMART PKS_ER_names_mod 86 381 IPR020843 GO:0016491
Tsu04g02841 385 Gene3D - 218 332 - -
Tsu04g02841 385 Gene3D - 84 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02841 Tsu-Chr4 34087745 34092272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02841 101 273 Monolignol Biosynthesis Gene Families AT4G39330 26.131 1.76e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02841 K18980 - gmx:100780585 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02841 04 34087745 34092272 Tsu04g02841 04 34087745 34092272 ECH