Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02840 ATGTCGACCGGAAAGAAAACCCAAGGTCGTCAAAAGATTGAAATTAAAAGGATTAGCAATGAGAGCAACATGCAAGTTACCTTCTCGAAGCGCCGTAGCGGGCTCTTCAAGAAAGCTAGTGAAATATTCACTCTTTGTGGGGCATATGTGGCtctaattatattttcaccTACTGAAAAGGTATTTTCCTTTGGTAACCCCGATCTTAATACGGTCATAGATCGTTATCTCTCGCGGGTCCCACCTCAAAACAACAACATCAGGCAATACATTGAGGCTTTTCGTAGCACCAACATGCGCGAACTCAATGCTCAGTTATCTCTGATCAAAGATGCACTGGACCACGAAAAAAGGTGTGGTGATGATCTGAGTCATGTTTGCAAGATGACTGAGGATCCATCTTGGTGGGCTTGTCCCGTTGATGGATTGAATGAGGCTCaacttgaatttttgaagaAGGCTTTGGAGGATCTGAATCAAAATGTTGCTCAACCAACTGATAGGCTTGAAGTCCCGGGTGCTCCTACCCAAGCTCAACAAGCTCAAATGTCTCCAACAGAATTTAATCAGAATCCTATGTTGCAGTCTCATTTGTCTGACTTCAATAATATAGGAGGAGGAGGATGTGGACCCTCCAGATCCTTTTAA 648 0.4198 MSTGKKTQGRQKIEIKRISNESNMQVTFSKRRSGLFKKASEIFTLCGAYVALIIFSPTEKVFSFGNPDLNTVIDRYLSRVPPQNNNIRQYIEAFRSTNMRELNAQLSLIKDALDHEKRCGDDLSHVCKMTEDPSWWACPVDGLNEAQLEFLKKALEDLNQNVAQPTDRLEVPGAPTQAQQAQMSPTEFNQNPMLQSHLSDFNNIGGGGCGPSRSF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02840 215 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu04g02840 215 PANTHER MADS BOX PROTEIN 7 182 - -
Tsu04g02840 215 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu04g02840 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 182 - -
Tsu04g02840 215 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Tsu04g02840 215 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu04g02840 215 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu04g02840 215 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu04g02840 215 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu04g02840 215 Gene3D - 20 93 IPR036879 GO:0003677|GO:0046983
Tsu04g02840 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02840 Tsu-Chr4 34084518 34085165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02840 5 176 Type I MADS-box Gene Family AT5G60440 45.714 3.72e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g02840 SRF-TF 6.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02840 - - mtr:MTR_1g105905 228.409