Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02818 ATGAACGGTTTTAGAGATACTTCTCCAATGAACGAATTCTGTAGAATTCTTTCACTTACAGGTTTTGTGAAAATGGCTCGTGTTTATATTGGGAATTTGGACCCTAGAGTCACTGAGAGGGAACTCGAAGATGAATTTCGTGTCTACGGTGTTCTCCGAAGTGTTTGGGTTGCTCGCAGGCCACCTGGATATGCATTTATCGAGTTTGATGATAGGAGGGATGCCCTTGATGCAATTCATGCCTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGAGTGGAGGAGGACGCCGTGGTGGTGGGCGCGGCGGACGTGGAGGGGAAGACCTGAAGTGCTATGAATGCGGTGAGCCTGGACACTCTGCTCGGGAGTGCCGTTCACGCGGTGGTTCACGAGGCCTAGGAAGTGGAAGAAGACGAAGTCCTAGTCCTTACTATCGTGGGCGTCGAAGTCCATGTTACGGTTATGGCCGCAGGAGTTATAGCCCGCGTGGGAGAAGTTCTCCAAGACGACGTAGCATAACACCTCCTCGTGGTCGTAGCTACAGCAGATCCCCTCCTCCATACCGTTATTCCCGCCGTGATTCACCCTATGCCAATGGAGATTAA 624 0.5048 MNGFRDTSPMNEFCRILSLTGFVKMARVYIGNLDPRVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKSGGGRRGGGRGGRGGEDLKCYECGEPGHSARECRSRGGSRGLGSGRRRSPSPYYRGRRSPCYGYGRRSYSPRGRSSPRRRSITPPRGRSYSRSPPPYRYSRRDSPYANGD 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02818 207 SUPERFAMILY RNA-binding domain, RBD 25 112 IPR035979 GO:0003676
Tsu04g02818 207 Gene3D - 117 167 - -
Tsu04g02818 207 MobiDBLite consensus disorder prediction 124 207 - -
Tsu04g02818 207 MobiDBLite consensus disorder prediction 91 112 - -
Tsu04g02818 207 Gene3D - 23 116 IPR012677 -
Tsu04g02818 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Tsu04g02818 207 ProSiteProfiles Zinc finger CCHC-type profile. 116 132 IPR001878 GO:0003676|GO:0008270
Tsu04g02818 207 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 18 205 - -
Tsu04g02818 207 Pfam Zinc knuckle 116 131 IPR001878 GO:0003676|GO:0008270
Tsu04g02818 207 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 18 205 - -
Tsu04g02818 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 97 IPR000504 GO:0003723
Tsu04g02818 207 SMART rrm1_1 27 93 IPR000504 GO:0003723
Tsu04g02818 207 SUPERFAMILY Retrovirus zinc finger-like domains 113 132 IPR036875 GO:0003676|GO:0008270
Tsu04g02818 207 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Tsu04g02818 207 CDD RRM_SRSF3_like 27 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02818 Tsu-Chr4 33200024 33203790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02818 28 83 Eukaryotic Initiation Factors Gene Family AT1G22760 43.333 3.66e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02818 K12896 - rcu:8262005 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02818 04 33200024 33203790 Tsu04g02818 04 33200024 33203790 ECH