LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g02815	ATGGCATCAAGATCCTATGCTAATCTCTTAGACTTAATTGGTGGAGGAGACttacttgatgattttgttCAATCCCCAAGAAATCTTCCAAGGGTTATGACTGTTCCTGGAATTATTTCCGACCTGGATGGTGATTCAGATGTTAGTTCTTCTGGATGTCGTGAGCGGAAAATCATTGTGGCAAACATGTTGCCACTGCAAGCTAAAAGAGATATAGAAACTGGTAAATGGTGTTTCAGTTGGGACGAGGATTCAATTCTACTACAATTAAAAGATGGTTTTTCTTCTGATACTGAGGTAATCTATGTGGGTTCCCTCAAGGTGGAGATAGATACTAGTGAGCAGGATGCAGTTGCTCATAAATTACTGGGTGACTTTAATTGTGTGCCTACCTTTCTACCCCATGAGCTGCAGAAAAAGTTCTATCTTGGTTTTTGTAAGCAGCAGCTCTGGCCTCTCTTTCATTATATGCTACCTATATGCTCAGATCACGGTGATCGCTTTGACCGCGCAATTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAAGTCATGGAAGTGATTAATCCTGATGATGATTTTGTATGGGTTCATGACTACCATTTGATGGTTTTGCCTACTTTCTTGAGGAAAAAATTTAATCGAGTTAAACTTGGGTTTTTTCTTCACAGTCCTTTCCCCTCGTCTGAAATTTACCGGACTTTGCCAGTAAGGGATGAAATTCTGAGAGGATTGTTGAATTCGGATTTAATTGGTTTTCATACATTTGATTACGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGTGGACATATAGGACTTGATTACTTCGGCCGCActatatttatcaaaattttgcCTGTCGGCATTCACATGGGTAGGCTTGACTCTGTATTAAATCTTCCTTCtacatcctctaaactaaaagaGATTCAGGAAGAGTTCAAGGATAAGAAAGTTATTCTGGGTGTTGACGACATGGATATTTTTAAGGGTATCAATCTGAAGTTTCTAGCTGTGGAGCAGCTGCTGCAGCAGAAGCCACATTTGCAGGGTCAAGTTGTCCTAATTCAAGTTGTAAATCCTGCAAGGGGTTCAGGTAAGGATGTTCAGGAAGCAAAGAAGGAAGCTTATTCAATTGCTCAAAGGATCAATGATAGATATGGTTCAAATGATTATCAGCCAGTCATTATAATTGACCGTCATGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTCTTGCCGAGTGCTGCATTGTCAATGCTGTAAGGGATGGGATGAACTTAGTCCCGTACAAATATATTGTCTGCAGGCAGGGAACTCCAAAGCTGGATGAAGCTGTGGGTAGAAGAAGTGATTGTCCCCGGACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTGAGTGGGGCCATCAGGGTCAATCCTTGGGATATAGAAGCAGTTGCTGATGCTCTGGATATGGCCCTCACTATTGGGGAACCAGAGAAGAAGTTGCGTCACGAGAAACACTATCGATACGTTAGTTCTCATGATGTGGCATATTGGGCACGCAGTTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACTCAAAAAGGTGCTGGGGGATGGGTTGGGGCTTGGCGTTTAGAgttatttctctttctcatgGTTTTAGGAAGTTGTCCCATGACCATATTATATCAGCATACAAAAGAACCAGTAGAAGGGCTATCTTTCTTGATTATGATGGCACTATTGTATCACAATCTTCTATTAATAAAACCCCCAGCACTGAAGTCATATCTGTGCTTAATGCTCTGTGTAACGATACCAAGAATATTGTGTTCATTGTTAGTGGAAGGGCAAGAGATTCTCTGAGTGAATGGTTTGCTTCATGCAAACTGCTTGGACTTGCAGCTGAACATGGATACTTCCTAAGATGGAATAGTGACTCTGAATGGGAAACCGGTCATTTCTCTGCAGACCTTGATTGGAAACAGATAGTGTTGCCCGTCATGCAGTCGTATACAGAAGCAACTGATGGATCTAACATCGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCAGATTTTGGTTCTTGCCAAGCCATGGAATTGTTGGATCACTTGGAAAGTGTTCTTGCTAATGAACCAGCACTTGTTAAGAGAGGCCAGCATATTGTTGAAGTTAAACCACAGGGAGTAACCAAAGGTTTGGTAGCTGAAAAGGTTCTGTTGAATATGGTTAATGGCGGTAACCCACCAGATTTCGTGATGTGTATCGGAGATGATAGGTCTGATGAAGACATGTTTGAAAGCATTTTGAGTACAGCCTCATGCCCATCGTTACCAGCTGCTCCGGATATTTTTGCCTGCACCGTAGGAAGGAAGCCTAGCAAGGCCAAGTATTTCCTTGATGATACTTATGATGTTGTAAGGCTGCTTGAAGGTCTTGCTGCCTCATCAAATCCATCAAAGCCCAGGCATCTTGGCCAATTCCAGGTTTCTTTTGACAGCACAGTTTCTTAG	2580	0.412	MASRSYANLLDLIGGGDLLDDFVQSPRNLPRVMTVPGIISDLDGDSDVSSSGCRERKIIVANMLPLQAKRDIETGKWCFSWDEDSILLQLKDGFSSDTEVIYVGSLKVEIDTSEQDAVAHKLLGDFNCVPTFLPHELQKKFYLGFCKQQLWPLFHYMLPICSDHGDRFDRAIWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKKFNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLDSVLNLPSTSSKLKEIQEEFKDKKVILGVDDMDIFKGINLKFLAVEQLLQQKPHLQGQVVLIQVVNPARGSGKDVQEAKKEAYSIAQRINDRYGSNDYQPVIIIDRHVPRFEKSAYYALAECCIVNAVRDGMNLVPYKYIVCRQGTPKLDEAVGRRSDCPRTSMLVVSEFIGCSPSLSGAIRVNPWDIEAVADALDMALTIGEPEKKLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYSKRCWGMGWGLAFRVISLSHGFRKLSHDHIISAYKRTSRRAIFLDYDGTIVSQSSINKTPSTEVISVLNALCNDTKNIVFIVSGRARDSLSEWFASCKLLGLAAEHGYFLRWNSDSEWETGHFSADLDWKQIVLPVMQSYTEATDGSNIEIKESALVWHHQDADPDFGSCQAMELLDHLESVLANEPALVKRGQHIVEVKPQGVTKGLVAEKVLLNMVNGGNPPDFVMCIGDDRSDEDMFESILSTASCPSLPAAPDIFACTVGRKPSKAKYFLDDTYDVVRLLEGLAASSNPSKPRHLGQFQVSFDSTVS	859

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g02815	859	SUPERFAMILY	HAD-like	588	836	IPR036412	-
	Tsu04g02815	859	CDD	GT20_TPS	56	541	IPR001830	GO:0003824\|GO:0005992
	Tsu04g02815	859	Gene3D	Glycogen Phosphorylase B;	309	525	-	-
	Tsu04g02815	859	Gene3D	Glycogen Phosphorylase B;	50	308	-	-
	Tsu04g02815	859	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	589	790	IPR006379	-
	Tsu04g02815	859	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	844	IPR001830	GO:0003824\|GO:0005992
	Tsu04g02815	859	Pfam	Trehalose-phosphatase	591	825	IPR003337	GO:0003824\|GO:0005992
	Tsu04g02815	859	Gene3D	-	717	847	IPR023214	-
	Tsu04g02815	859	Gene3D	-	587	703	IPR023214	-
	Tsu04g02815	859	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	56	545	-	-
	Tsu04g02815	859	Pfam	Glycosyltransferase family 20	56	541	IPR001830	GO:0003824\|GO:0005992
	Tsu04g02815	859	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 8-RELATED	1	844	-	-
	Tsu04g02815	859	CDD	HAD_TPP	589	830	-	-
	Tsu04g02815	859	TIGRFAM	T6PP: trehalose-phosphatase	586	835	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g02815	Tsu-Chr4	33089930	33095074	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g02815	1	858	Trehalose Biosynthesis Gene Families	AT1G23870	74.453	0.0	1363

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g02815	K16055		-	gmx:100775779	1496.87