Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02803 ATGGATGGTTTCAGGGATCGGGAGATTGACATGTACCCGGAGTATGATAAGTTTCGAGATGGTTATACAAACATTGAAAACTACGGGGATCGAGGATATGACAAACCTGCAAGGTTCGCAGGGCATGACCGCGACGATTATGCATATGATGATTATGGCCACAAGTCCCGTGTTTCGCATCATCGGAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGCCATAGTTATGATTCTGATTATGAAAAAGATAGCAGAAGAGATAGTAGTTGGAGGCGACGTGAATCACGCGATCGAGAGCGAGACAAGAGATGTCTTAGTCGGGAAAAAGATCCAAGTCCGCATAGGAAACATGAGCTTTCAAGATCACGTTCACGATCCCATTCTCGATCCCGGTCCCACTCCCGTTCCCATTCTCACTCTCGTTCCCGTTCCCAATCTCGTGGATATGATGATCATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCATAGTCGGAGTTATCGGGAAGACAGCTATACTGATAATCGATATGATAGAAGTGAAAGACGCAGGGACCGTGATGATAAACATCAGCGGGAGCATTATTCTGTGGCCCCTTCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAGTTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGGGCGGCACAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGAAGAAAGCTTTTCTTTGAATATagTAGTAAGCCAACTGGCGGTGCAGGTCCAGATGGAGCTTTGAAATCTGGTCATAGTCATAAGGGCATTACAATACCATCTGATTGGATGTGCACTATATGCAGCTACATCAATTTTGCACGACGGACTTCCTGCTATCAGTGTAATGAACCACGCACTGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAACATCCTTAGGAAAGAAAGGTCTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCCGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTTACTCATGTTTCAAGGGGATTTGCATTTGTACATTTTTATTCGGTAGAAGATGCTACCAAAGCTCTTGACTTAACAAATGGAACTGCCCTTGAGAAGAATGGTCAGATTCTAAGAGTAGCATATGCAAAAAGCATACTGGGCCCTGGATCAGGTGCGTCAGGAACTTCACAGTCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTCGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCAGAGCAGACTAGTACTGATGTTGGTGCACCACAATCTGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTACTTCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCATACTCAGCAGTACATCCCATGCactgaacaaaatcagaataaATCATCTAATAACGAGTCTGAACCTTCTAAGTCATCTGATGGTTTGAGCACTAAAAAGGTAGTGATTTCTGCACCAGCGACTATTGTTACTTCAAATGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCAGCTGCAGCCGCTGCTTTAGCTgcagagaaaaaagagaaagaaaaatcaaagGAGATAAAACTTGCTTCAAAAAGCAGTATTCTggcaaacaagaaaaaaatgaacaatGTTCTGACAATGTGGAAACAGAGGAGTCATGAGGGACAGGCTACTCGAGTGGCACTGGAGGACAATCAGTTATCTGGTTCTGCTGACGATAGGCCATATTCTTCTGCACATTCTGCAAAGAATAAGTTAAAAAATGATACATCATCCAGGGAAATTAATGCGTCTAATCCGGGAAGTCACACAAATGCACAGGCTGCCACTAATGACTCTCAGGCACAGCCACGACCTTTCAGCAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTCTTATTCTGGCTCTACGTCTGCCACACCATCTACGTCAGCTTCATCTTCAGCAAATATTGAGGCACAATCATTTGCTACTCCCTTCAAAACAGACGTCTCTTCCCTGGGTTCATATACACCATCTGTGTCTGTTGGAAGCGGAAGAAGAAGGTTTTCAGAAATGCCTCTTTCTGCTTCAGCACATAAGGAACAGTCACAAACAGCCTACAGGGATCGGGCAGCTGAGAGAAGAAGTTTGTATGGCTCGTCATCTTCAGTTGGCAGTGATTTGGCTGACCTTGAAATTGGGGATTCAACTCGAGATTTTGCATCAAGGAGGGGTGATACAATGCCATTCCCTCCTGGAGTTGGTGGAGGACGCCCGGTTGGAGATGTCAACCTCGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAAGAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGCTTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTTCAGACACAAGCCATGGAAAATAGAGCAGGGCTTGGAAGTCAGCAGAAAAAGTTGGACCCTAGCCTCGAGGTGCAGGCCAACGATAGCTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGTGAAATGTAA 2871 0.4389 MDGFRDREIDMYPEYDKFRDGYTNIENYGDRGYDKPARFAGHDRDDYAYDDYGHKSRVSHHRREDSHDRDYDHGRHSYDSDYEKDSRRDSSWRRRESRDRERDKRCLSREKDPSPHRKHELSRSRSRSHSRSRSHSRSHSHSRSRSQSRGYDDHPKSRSPRGRSHSRSYREDSYTDNRYDRSERRRDRDDKHQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGAGPDGALKSGHSHKGITIPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISLSNSTSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLTNGTALEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSNGPEQTSTDVGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHTQQYIPCTEQNQNKSSNNESEPSKSSDGLSTKKVVISAPATIVTSNEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLSGSADDRPYSSAHSAKNKLKNDTSSREINASNPGSHTNAQAATNDSQAQPRPFSNSLGGTLMGVIRGSGRGVVKSDTSYSGSTSATPSTSASSSANIEAQSFATPFKTDVSSLGSYTPSVSVGSGRRRFSEMPLSASAHKEQSQTAYRDRAAERRSLYGSSSSVGSDLADLEIGDSTRDFASRRGDTMPFPPGVGGGRPVGDVNLDTFEVITADKAIDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQANDSYKMLIHKKALARFREM 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02803 956 MobiDBLite consensus disorder prediction 487 501 - -
Tsu04g02803 956 Pfam G-patch domain 882 923 IPR000467 GO:0003676
Tsu04g02803 956 ProSiteProfiles G-patch domain profile. 881 927 IPR000467 GO:0003676
Tsu04g02803 956 CDD OCRE_SUA_like 499 551 IPR035623 -
Tsu04g02803 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 440 IPR000504 GO:0003723
Tsu04g02803 956 SMART zf_4 307 331 IPR001876 -
Tsu04g02803 956 Pfam OCRE domain 502 550 IPR041591 -
Tsu04g02803 956 Gene3D - 341 465 IPR012677 -
Tsu04g02803 956 SMART rrm1_1 361 436 IPR000504 GO:0003723
Tsu04g02803 956 SMART rrm1_1 204 279 IPR000504 GO:0003723
Tsu04g02803 956 MobiDBLite consensus disorder prediction 120 144 - -
Tsu04g02803 956 CDD RRM1_RRM2_RBM5_like 358 438 - -
Tsu04g02803 956 SUPERFAMILY RNA-binding domain, RBD 358 445 IPR035979 GO:0003676
Tsu04g02803 956 SUPERFAMILY RNA-binding domain, RBD 122 281 IPR035979 GO:0003676
Tsu04g02803 956 SUPERFAMILY Ran binding protein zinc finger-like 301 335 IPR036443 -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 31 119 - -
Tsu04g02803 956 SMART G-patch_5 879 925 IPR000467 GO:0003676
Tsu04g02803 956 Gene3D - 305 335 - -
Tsu04g02803 956 PANTHER FI21118P1 111 956 - -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 735 757 - -
Tsu04g02803 956 ProSitePatterns Zinc finger RanBP2-type signature. 309 328 IPR001876 -
Tsu04g02803 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 283 IPR000504 GO:0003723
Tsu04g02803 956 MobiDBLite consensus disorder prediction 775 825 - -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 553 575 - -
Tsu04g02803 956 ProSiteProfiles Zinc finger RanBP2 type profile. 305 334 IPR001876 -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 645 718 - -
Tsu04g02803 956 PANTHER RNA-BINDING PROTEIN 111 956 - -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 478 502 - -
Tsu04g02803 956 Gene3D - 167 303 IPR012677 -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 21 199 - -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 145 197 - -
Tsu04g02803 956 MobiDBLite consensus disorder prediction 645 757 - -
Tsu04g02803 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 264 IPR000504 GO:0003723
Tsu04g02803 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 427 IPR000504 GO:0003723
Tsu04g02803 956 CDD RRM1_RRM2_RBM5_like 201 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02803 Tsu-Chr4 32667295 32676475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02803 202 424 Eukaryotic Initiation Factors Gene Family AT2G36660 25.498 7.87e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02803 K13094 - gmx:100777686 1432.93