Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02791 ATGGGTCGTGCGAGTGGAAAAGTAACCTTGAAAAAGATTCAAAATGAGAAAGTTCGAAAAGCGGCTTTCATTCAAAGAAAGAAAGGATTAACAAAAAAAGTCATTGATTTTTCTAAGAACTTTGGAGTTGAAGCTTGCTTAATTGTGTACGATGGTGATGGTGATGGTAAACCAATGACTTGGCCACAAGACTCCAAAATTCTACGATCCATGCTTACAAAATATGAGCAACAAAAGATTGAGATGACTACAAAAGAATTTAACGCGAAggattattttgaaaataagaaGAATAAGGTTGAAGCTGATATTTTGAGTGTGCGGAAAAAGATTGTAATGAATAAATATCCAACTTGGGGTCGGTGTTTCAATAACTTGGGAAGGGAGCAACTGAGAGGTTTCATTGATATTGTTGATCTCAAAATTCAAGCTTGTAATCAAAGGATCAACATGCTGAAAAGTATGCAACAATGTGATCAAAAGAATTTCATCCAAAACACCGCTAAGATACAAATTGTGCCTCCAGAGAATGTTGTCTCTCCACAATCAAGTCACCCTATGAAGCCTCTTATTGATATTAGTGAGATGAAGGATTTCACTGATCTTATTGAGTGGGATGATCCGATGCCTCAAAAGAATGTTTTTTCCTCACAATCGAGTCAACTTGATGTTATGCACAACATTCCTCAAATGCAACATGTCCCTGCTCCTTTGAAGCCAATTGATAATATTAGTGACATGATAGATTTCACCGATATCGATCTTATTGAGTGGGATGATCTTATGCCTCAAAAGAATGTTTCTTCATCACAGTCAAGTCAACTTGATGTTATGCCTAACATTCCTCAAATGCAACCTGTCCATACTCCTTTGAAGCCAATTGATAATATTAGTGACATGATAAATTACACCAATCTTATTGAGTTGGATGATCTTATGCCTCAAAAGAATGTTTTCTCCTTACAATCAAGTCAACTTGATGTTATGCATAGCATTCCTCAAATGCAATATGTCCATGCTCCTTTGAAGCCACTTGATAATATTAGTTTGCATCAAGTTTCATCAACTGGCCAACTTGGCGTATTTGGGAAGATAGATGATTTAGTGGATAAATCTGATCAGAAATGGGCTACTCAACTTGTAGATTTTGATAATTGGGCAGCTAATAATAAACTAAATGAAGGTGATGATTGGGTTAAGCAGTCTGGTGTGTTTGTAGGGAAAGATATGTCCTTTTTATCTGAAATTGAACAAGAATGTGCAGCTTTGGATGCCTTTCTCCAACCAAGATATTGA 1296 0.358 MGRASGKVTLKKIQNEKVRKAAFIQRKKGLTKKVIDFSKNFGVEACLIVYDGDGDGKPMTWPQDSKILRSMLTKYEQQKIEMTTKEFNAKDYFENKKNKVEADILSVRKKIVMNKYPTWGRCFNNLGREQLRGFIDIVDLKIQACNQRINMLKSMQQCDQKNFIQNTAKIQIVPPENVVSPQSSHPMKPLIDISEMKDFTDLIEWDDPMPQKNVFSSQSSQLDVMHNIPQMQHVPAPLKPIDNISDMIDFTDIDLIEWDDLMPQKNVSSSQSSQLDVMPNIPQMQPVHTPLKPIDNISDMINYTNLIELDDLMPQKNVFSLQSSQLDVMHSIPQMQYVHAPLKPLDNISLHQVSSTGQLGVFGKIDDLVDKSDQKWATQLVDFDNWAANNKLNEGDDWVKQSGVFVGKDMSFLSEIEQECAALDAFLQPRY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02791 431 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Tsu04g02791 431 Gene3D - 15 101 IPR036879 GO:0003677|GO:0046983
Tsu04g02791 431 PANTHER MADS BOX PROTEIN 5 246 - -
Tsu04g02791 431 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Tsu04g02791 431 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 61 IPR002100 GO:0003677|GO:0046983
Tsu04g02791 431 SUPERFAMILY SRF-like 6 79 IPR036879 GO:0003677|GO:0046983
Tsu04g02791 431 PANTHER PROTEIN, PUTATIVE-RELATED 5 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02791 Tsu-Chr4 32535821 32537116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02791 1 148 Type I MADS-box Gene Family AT5G55690 33.333 1.17e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g02791 SRF-TF 6.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02791 - - mtr:MTR_2g049630 232.646