Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02780 ATGGCAGGAAACAGCAAAGCAACAAAATTCAACAGACGAAAGAGAAAAATTGGTGAAatcaagaaagtgaaaaatTCGATTAAGTTtgatatgatattttcaaaACGCAAAATTGGTCTTTTCAACAAAGTAACAGagctctctgttttgtgtaaaGCAAAAACTGCACTCATCATCACATCACCCGACAATAAACACTATGTATGTGGTTATCCTAATTGTGACGCCGtcattaaacaattttttactggAAAAGACATCGTGGAAGACGGTGCAAAAAAGAAGCAAGAGGAGATTGTTGAAACCCTAAGGCTTGAATATGAGGCAATTGAAGATAaacttgaagaagaaaaggagaattttgaagctatcatcactaatgagaaAGAGAAGGGTGATTCTATATTCCCTTGTTGGTGGGGTGATTCTATTGATGATATGGATTTAGAATCTCTTGAAATATTCACGGCTTCTTTATAA 480 0.2771 MAGNSKATKFNRRKRKIGEIKKVKNSIKFDMIFSKRKIGLFNKVTELSVLCKAKTALIITSPDNKHYVCGYPNCDAVIKQFFTGKDIVEDGAKKKQEEIVETLRLEYEAIEDKLEEEKENFEAIITNEKEKGDSIFPCWWGDSIDDMDLESLEIFTASL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02780 159 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Tsu04g02780 159 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Tsu04g02780 159 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Tsu04g02780 159 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Tsu04g02780 159 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Tsu04g02780 159 PANTHER MADS BOX PROTEIN 8 159 - -
Tsu04g02780 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 67 IPR002100 GO:0003677|GO:0046983
Tsu04g02780 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 8 159 - -
Tsu04g02780 159 Coils Coil 93 131 - -
Tsu04g02780 159 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Tsu04g02780 159 Gene3D - 28 109 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02780 Tsu-Chr4 32333580 32334059 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02780 19 159 Type I MADS-box Gene Family AT5G60440 31.757 2.72e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g02780 SRF-TF 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02780 - - cam:101507050 146.362