Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02775 ATGGCAGGAAACAACAATGCAAGAAAATCCAACACACCAAAGAGAAAAATTGGTGAAatcaagaaagtgaaaaatTCGAACAAGTCTGACATGATGTTTTCAAAACGCAAAATTGGTCTTTTCAACAAAGTAACAGAGCTCTCGGTTCTGTGCAATGCAAAAATTGCACTTATCATCACATCACCCGACAATAAACTCTATGTATGTGGCTATCCTAATTGTGATGCCGtcattcaacaattttttactgGAAAAGACATTGTGGAAGACGGTGCAAAAAAGAAGCAAGAGGAGATTGTTGAAACCCTAAGGCTTGAATATGAGGCAATTGAAGATAaacttgaagaagaaaaggagaattttgaagctatcatcactaatgagaaAGAGAAGGGTAATTCTGTATTCCCTTGTTGGTGGGGTGATTCTATTGATGATATGAATTTAGAATCTCTTGAAGAATTCACGGCTTCTTTACAAAATCTAAGGCTCAATTTAGGTTCCGCCATGGACGAAAAGAAGTTAATGTTCACATCCAATGATCAATTTAACACATTGTCAAATTAA 567 0.3139 MAGNNNARKSNTPKRKIGEIKKVKNSNKSDMMFSKRKIGLFNKVTELSVLCNAKIALIITSPDNKLYVCGYPNCDAVIQQFFTGKDIVEDGAKKKQEEIVETLRLEYEAIEDKLEEEKENFEAIITNEKEKGNSVFPCWWGDSIDDMNLESLEEFTASLQNLRLNLGSAMDEKKLMFTSNDQFNTLSN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02775 188 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Tsu04g02775 188 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Tsu04g02775 188 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Tsu04g02775 188 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Tsu04g02775 188 Coils Coil 152 172 - -
Tsu04g02775 188 Gene3D - 25 97 IPR036879 GO:0003677|GO:0046983
Tsu04g02775 188 PANTHER MADS BOX PROTEIN 11 176 - -
Tsu04g02775 188 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 11 176 - -
Tsu04g02775 188 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Tsu04g02775 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 68 IPR002100 GO:0003677|GO:0046983
Tsu04g02775 188 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Tsu04g02775 188 Coils Coil 93 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02775 Tsu-Chr4 32273731 32274297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02775 15 163 Type I MADS-box Gene Family AT5G60440 31.646 5.40e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g02775 SRF-TF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02775 - - cam:101507050 168.318