Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02773 ATGGAGAGgtacaaattaattaaagaagtTGGTGATGGAACATTCGGAAGTGTCTGGAGAGCCATTAATAAGCAAAGCGGTGAAGTTGTTGCAatcaagaaaatgaagaagaaatatTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGTCGCTACGAAAAATGACTCACTCAAATGTTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACCTTGTTTTTGAGTACATGGAATGCAACCTCTACCAACTTATGAAAAAAAGGGAAAAGCCGTTTTCTGAAGATGAAGttaaaaatttgtgttttcaAGTTTTCCAAGGTCTTGCATACATGCACCAGCGTGGATACTTTCATCGTGATCTAAAGCCTGAAAACTTGTTAGTCACCAAGGATATTATCAAAGTTTCTGATTTCGGCCTAGTGCGAGAGATCAGCTCACAACCACCCTATACCGAGTATGTCTCCACACGATGGTATCGTGCTCCTGAAGTTTTGCTTCAGTCTTCCCTTTATAGCTCCAAAGTTGACATGTGGGCTATGGGTGCTATTATGGCTGAGTTGTTCACTCTAAGTCCTCTATTTCCGGGTACCAGTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCGCTGAATCTTGGGCTGATGGAATCAAACTTGCTAGGGATATCAACTATGAGTTTCCACAGCTAGCTACTGCAGATCTCTCTGTACTGATTCCATCCAGAAGCAACGAGGCAATCAACCTTATAAAATCACTTTGTTCATGGGATCCCTGCAAGAGACCTTCTGCAGCAGAGGCCCTTCAGCATCCTTTCTTCAAGAGTTGCTTTTACATTCCTCCATCGCTTCGCACCAGAGCAGTAACCAGAACTCCTCCATCTGCTGGAATAAGGGGATCGGTGGATCGGCAAGGGGTCAAGAGACTTTCTGGTGCATTGCCTAATTCAAAACTTGCCACAAATTTTTCTTCCCCCAAATTACGTCCTGCTTTAGCTCCAGGTGTGCAACGAAAGCTGGATATGGCAAATGAGGAtggaattaaaaataagaaaccaGTGAAGACTACTCAACAATCAAAATATCAACCGCCAGGAAAAAACAGCCCAACTTCTGTAAACAAATGGAGGACTGCACGTGGAGTTTCAGCAACAGCTGACAAGTTAGCCAACATGTCAATGGCTACTCGAAGACAGTCCTTGGGTCAAACCCGTCCACCTCCTATGAAGGCCGGAGTTAATTGGAATTCTGAATCTGGAAACATGCTGCTCAGGTCCTCCCAACAGATTCCAACGGGAAGAACTTTCACAAAAAGAGTTGCTGGATGA 1356 0.4196 MERYKLIKEVGDGTFGSVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMTHSNVVKLKEVIRESDILYLVFEYMECNLYQLMKKREKPFSEDEVKNLCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKVSDFGLVREISSQPPYTEYVSTRWYRAPEVLLQSSLYSSKVDMWAMGAIMAELFTLSPLFPGTSEADEIYKICSVIGSPTAESWADGIKLARDINYEFPQLATADLSVLIPSRSNEAINLIKSLCSWDPCKRPSAAEALQHPFFKSCFYIPPSLRTRAVTRTPPSAGIRGSVDRQGVKRLSGALPNSKLATNFSSPKLRPALAPGVQRKLDMANEDGIKNKKPVKTTQQSKYQPPGKNSPTSVNKWRTARGVSATADKLANMSMATRRQSLGQTRPPPMKAGVNWNSESGNMLLRSSQQIPTGRTFTKRVAG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02773 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Tsu04g02773 451 CDD STKc_MAK_like 4 283 - -
Tsu04g02773 451 PANTHER - 1 427 - -
Tsu04g02773 451 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Tsu04g02773 451 Gene3D Transferase(Phosphotransferase) domain 1 83 288 - -
Tsu04g02773 451 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Tsu04g02773 451 MobiDBLite consensus disorder prediction 353 383 - -
Tsu04g02773 451 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Tsu04g02773 451 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02773 451 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02773 451 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 427 - -
Tsu04g02773 451 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02773 451 MobiDBLite consensus disorder prediction 362 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02773 Tsu-Chr4 32257503 32264714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02773 1 290 Core Cell Cycle Gene Families AT3G48750 37.584 3.30e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Tsu04g02773 Pkinase 8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02773 K08829 - gmx:100784474 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02773 04 32257503 32264714 Tsu04g02773 04 32257503 32264714 ECH