Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02772 ATGGAGTCCTCAGATCATGTTGTTCTCTTCATTGACCAACAAATCAACCCTAAACCTTCCACAATGGAAGCTGAAACTCACAACAACAACACTCAACCTCATCAAGAGAAGCCCAAACATCCCTTAAGAGCGAAAACCCTTAACCGTCTAAGCTTCTCCAAACCCAAATCTCGAATCCTTGAATATAGTCATCCACACCGAAACCAACTACCTACAACCGATGAAGAAAACACTCAATTACCTTCATACAAGATCTCTTCTGATGATGAAGACGACAATGACTATGAATACAAGGAAGAAGAATCGGAGGATGATTATGACGAGGCTTTGCACGATCCGAAgttaaacaacaaaaagaaaaaatttaaagtgaaGTGGAGGCTAGTTTTTGAGTGGATACTATTTATAAACATATTAACATGTTTGGTTTGTTCTCTCGTAGCAAAACGCATAAAAAACATGCATCTATTAGGGTTAGAGGTTTGGAAATGGTGTTTAATGGCAATGGTCACATTTAGTGGCCGTTTATTTTCAAGTTGGTTAGTTAGTTTCACCGTTTTTTTCATCGAAAGAAACTTCATGTTAagagaaaaagttttatatttcaTCTACGGTTTACGAAATAGTATTCGTAATTGTTTATGGTTAGGGCTTGTTTTAATGTCATACTGGAGTGTAGTTTTCGAGGATTTCCAAAAGAAAAACCATAAATTCCTTAACAAAGTGTTTCAAGCACTTGTCGCGGTTTTAATAGGTGCAACAATTTGGTTAGTGAAAATTGTTTTGGTAAAAATGTTAGCTTCTTCATTTCATGTGACAACATATTTTGATAGGATGAAAGAGAGTGTTTTTCATCATTATGTGTTGGATGCATTATCGGGTCCACCGGTCGAAAACGGAGAAGAGATATCGAAATCGAAAGAGTATCATTTGATGGGATCGAAGACAATGCCCGTGGGTGGGGCAAggtggaagaagatgaagagatttagTTCGAGGAGGATTGATATGGAGAAGTTGAAGAAACTTAGTATGGAGAGTAGTGGTTCTGTTTGGAGTGTTAAAAGGCTTGTTAATTATGTTAGGTCTTCGGGTTTGTCTACTATTTCTAGGACTATTGATGATTTTGGTAATAGTGAGAGTGAGATTAGTAGTGAATGGGAAGCTAGAAGTTGTGCTCAAAAGATTTTCAACAATGTTGCTAAACCTGGTGCCAAGTATATTGAAGAGGAAGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTCCCACTTTTTGAAGGTGCTCTTGAAACTGGAAAAATTAGCGGATCCTCATTTAGAAATTGGGTGATTCGAGCATATTATGAAAGAAAAGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGCAGTAGTGAGtgtgataataataattgtgacaCTTTTGGTGATGGAAGTAGCTACAATGaagataatattattttgtatcacaCAAACTGTTTTAATAGGAGTTGCCTTTCAAGGCACTTGCAAAACTGTCTTGGAAGCTATTATCTTTGTCTTCATCATGCACCCTTTTGATATTGGAGACCGTTGTGTTATTGATGGTGTTCAGATGATTGTGGAAGAAATGAATATCTTGACAACGGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAATGCTGTTTTGCTCACTAAGCCAATAAGCAATTTTTATAGGAGTCCAGAGATGTGTGATGCAATTGATTTCACCATTGATGTCACAACTCCTGTAGAGACTATCATTACACTCAAAAAATCGATAAAAATGTACATTGAGAGCAAACCAAAGTATTGGAATCCAAAGCACAGTGTGATGGCAAAACAAATAGATCATGTGGACAAGTTAAGGTTGTGTTTATGTGTGCAACACACCATTAACCATCAAAATTATGGTGAGAGAAGCACTAGAATATCAGAACTCATCTTGGAGTTGAAAAAGATGTTTGAGATTCATGGTATCAAGTACCATCTTCTTCCTCAAGAAATCCATCTCACTCAAATGAATATTGGAAATGGGAGAAATTTGTTTCAATCATGA 2109 0.3499 MESSDHVVLFIDQQINPKPSTMEAETHNNNTQPHQEKPKHPLRAKTLNRLSFSKPKSRILEYSHPHRNQLPTTDEENTQLPSYKISSDDEDDNDYEYKEEESEDDYDEALHDPKLNNKKKKFKVKWRLVFEWILFINILTCLVCSLVAKRIKNMHLLGLEVWKWCLMAMVTFSGRLFSSWLVSFTVFFIERNFMLREKVLYFIYGLRNSIRNCLWLGLVLMSYWSVVFEDFQKKNHKFLNKVFQALVAVLIGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPPVENGEEISKSKEYHLMGSKTMPVGGARWKKMKRFSSRRIDMEKLKKLSMESSGSVWSVKRLVNYVRSSGLSTISRTIDDFGNSESEISSEWEARSCAQKIFNNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISGSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVTLLVMEVATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMCDAIDFTIDVTTPVETIITLKKSIKMYIESKPKYWNPKHSVMAKQIDHVDKLRLCLCVQHTINHQNYGERSTRISELILELKKMFEIHGIKYHLLPQEIHLTQMNIGNGRNLFQS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02772 702 MobiDBLite consensus disorder prediction 14 29 - -
Tsu04g02772 702 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 699 - -
Tsu04g02772 702 MobiDBLite consensus disorder prediction 89 107 - -
Tsu04g02772 702 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 699 IPR016688 -
Tsu04g02772 702 PIRSF Memb_At2g17000 10 701 IPR016688 -
Tsu04g02772 702 MobiDBLite consensus disorder prediction 1 48 - -
Tsu04g02772 702 SUPERFAMILY Sm-like ribonucleoproteins 523 581 IPR010920 -
Tsu04g02772 702 MobiDBLite consensus disorder prediction 61 110 - -
Tsu04g02772 702 Gene3D - 532 581 IPR023408 -
Tsu04g02772 702 Pfam Mechanosensitive ion channel 473 678 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02772 Tsu-Chr4 32243641 32254722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02772 38 692 Mechanosensitive Ion Channel Family AT5G12080 42.857 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02772 K22048 - gmx:100813521 1040.8