Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02766 ATGGAATCAAATGGTGATCGTGAGTTTTGTGCAAATGGAACATGCATGAAAACAGCAGAAGTTGAAGCTAAACTTGATCAAGGAAATATTCAAGATGCTGAAACTGCATTAAGAGATGGTTTATCTCTTACTTCTGAGGAAGCAAGAGCTCTTCTCGGAAAATTAGAGTATCAAAGAGGTAATGTCGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTTAAAGCTGCCATACAACGGCTCCAACCTTCCCTTTCGGAAAAGCCAGCCAAGAAAGGTCCATCTCATGCTGAATCACCTTCTTCAGTAACTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTATTTAAAAGCCAAGACTCTACAAAAACTGGGGAAATTTAACGAAGCTGTGAATGAATGCAAGCAAGTTGTTGATGCTGTTGAGAAGGTATTTTCTCAAGGTATACCTGAGACTCAAGGGGACAATAGATTGCAGGAGATAGTAAGTTGTGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCGGGTTGCTATCCCGAGGCAATAAAGGCTTACAGGCATGCCCTTCTCAGTCAATGGAACCTTGATAACAATTGCTGTGCGAGAATTCAGAAAGCGTTTGCAGCATTTTTGCTATATAGCGGGGTGGAGGCAAGTCCACCTAGTTTTTCCGGTCAGGTTGAAGGGACTTATGTACCTAAAAATAATATCGAAGAGGCGATTCTTCTTCTTATGATTATTTTGAGCAAGTGTAGCCTAGGAAAGGTAAAATGGGATCCATCTGTTATGGAACACCTAACTTTTGCACTTTCAATTTGTGGCGAAACTTCTATTTTGGCGAAACAATTTCAAGAGTTGATGCCTGGCGTATATCATCGAATTGACCGTTGGAATTCTTTAGCTCTATGTCTTAGTGGTGctggacaaaataaaaatgcttTGAGTCTGCTAAGGAAGTCTTTGCACAAACATGAACGACCGGATGACTTGGTAGCGTTATTATTAGCTGCAAAGGTTTGCAGTGAGGATCCTCATCTTGGTGCTGAGGGAGCAGGATATGCACAGAGGGCAGTCGATAAAGCTCAGGGCGTAAATGAGCATTTGAAAGGCGTTGCTCTTCGAATGCTCGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTTCCTCCGATTTCGAGAGGTCCATGCTTCAGTCAAAAGCTTTGCAATCACTGGAGGAGGCAGTTAGATTAGAGCAAAACAATTTTGATCTTATTTTTGAATTGGCTATTCAATATGCGGAACATCGAAATTTGGCTGTTGCTTTACGCTATGCTAAGCAGTTCTTCGACAAAACTGGTGGCTCTAAATTGAAAGGTTGGAGATTGCTTTCTCTGGTTTTGTCTGCGCTGAAAAGATTTTCAGAGGCTGAAGTGGTTACTGATGCTGCTTTAGATGAGACCTCAAAATGGGAGCAGGGACCTCTGTTCAGGCTAAAAGCCAAGCTGAAGATCGCCGAATTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTCTGGACCTCAATCACTTAGTTCACAGGATGAGgatgataaaataaatgaatttgaaGTTTGGCATGGTCTAGCAAATTTATATGCAAGCCTTTCACATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTCGAGAGTTGAAGGAATTCTCGGCAGCAACAATACAAACCGAAGGTGTGGTGTTTGACGGCCGTGGACAAAACGATGAAGCTCTTGCAGCGGCTGCTAATGCTGTCCTAGTTGAACCGAGCCATGTTCCAAGCAAGATATTGATGGCTTCTTTGTTGCTGAAAAATGGTCCCAATGCATCACCTGTTTCTAGAAGCATACTTTCTGATGCACTCAGAATAGAACCAACTAACCGCAGTGCTTGGTATTATCTCGGATTAACTCACAAGAATGATGGTCGACTAAGCGATGCAGCTGATTGCTTCCAGGCAGCTGCCATGCTTGAAGAATCTGATCCTATTGAAAGTTttagttctatgatttaa 2067 0.4204 MESNGDREFCANGTCMKTAEVEAKLDQGNIQDAETALRDGLSLTSEEARALLGKLEYQRGNVEGALRVFDGIDLKAAIQRLQPSLSEKPAKKGPSHAESPSSVTQHAASMVLEAIYLKAKTLQKLGKFNEAVNECKQVVDAVEKVFSQGIPETQGDNRLQEIVSCAVELLPELWKQAGCYPEAIKAYRHALLSQWNLDNNCCARIQKAFAAFLLYSGVEASPPSFSGQVEGTYVPKNNIEEAILLLMIILSKCSLGKVKWDPSVMEHLTFALSICGETSILAKQFQELMPGVYHRIDRWNSLALCLSGAGQNKNALSLLRKSLHKHERPDDLVALLLAAKVCSEDPHLGAEGAGYAQRAVDKAQGVNEHLKGVALRMLGLCLGKQAKVASSDFERSMLQSKALQSLEEAVRLEQNNFDLIFELAIQYAEHRNLAVALRYAKQFFDKTGGSKLKGWRLLSLVLSALKRFSEAEVVTDAALDETSKWEQGPLFRLKAKLKIAELRPMDAIEIYRYLLALVQAQKKSSGPQSLSSQDEDDKINEFEVWHGLANLYASLSHWKDAEICLQKARELKEFSAATIQTEGVVFDGRGQNDEALAAAANAVLVEPSHVPSKILMASLLLKNGPNASPVSRSILSDALRIEPTNRSAWYYLGLTHKNDGRLSDAADCFQAAAMLEESDPIESFSSMI 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02766 688 SUPERFAMILY TPR-like 47 193 IPR011990 GO:0005515
Tsu04g02766 688 SUPERFAMILY TPR-like 542 675 IPR011990 GO:0005515
Tsu04g02766 688 ProSiteProfiles TPR repeat profile. 646 679 IPR019734 GO:0005515
Tsu04g02766 688 PANTHER CALMODULIN-BINDING PROTEIN 5 687 - -
Tsu04g02766 688 Gene3D Tetratricopeptide repeat domain 232 486 IPR011990 GO:0005515
Tsu04g02766 688 MobiDBLite consensus disorder prediction 84 103 - -
Tsu04g02766 688 PANTHER PROTEIN NPG1 5 687 IPR043376 -
Tsu04g02766 688 SUPERFAMILY TPR-like 112 437 IPR011990 GO:0005515
Tsu04g02766 688 Gene3D Tetratricopeptide repeat domain 18 217 IPR011990 GO:0005515
Tsu04g02766 688 SMART tpr_5 542 575 IPR019734 GO:0005515
Tsu04g02766 688 SMART tpr_5 576 609 IPR019734 GO:0005515
Tsu04g02766 688 SMART tpr_5 646 679 IPR019734 GO:0005515
Tsu04g02766 688 SMART tpr_5 296 329 IPR019734 GO:0005515
Tsu04g02766 688 SMART tpr_5 112 145 IPR019734 GO:0005515
Tsu04g02766 688 Pfam Tetratricopeptide repeat 20 70 - -
Tsu04g02766 688 Pfam Tetratricopeptide repeat 648 680 IPR019734 GO:0005515
Tsu04g02766 688 Gene3D Tetratricopeptide repeat domain 487 628 IPR011990 GO:0005515
Tsu04g02766 688 Pfam Tetratricopeptide repeat 113 140 IPR019734 GO:0005515
Tsu04g02766 688 Gene3D Tetratricopeptide repeat domain 630 684 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02766 Tsu-Chr4 32137975 32141341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02766 7 688 Calmodulin-binding Proteins AT2G43040 69.096 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02766 K21843 - gmx:100811897 1096.26