Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02765 ATGGATACACATAAGAAGAAAGTTTTGGCGGTTCCCCCTTCAACTAATGACAAAGCTAATTGGGTGGATCTTAAAGCAACCGAAATCTTCATCAAAACATGCTTTGATCAAATTACCAAGGGTGAACGCGTCGGTACTTGTTTTACTAAGAAAGGGTGGAAAGGCATTGTTTCCCAATTCAATGCTTTAACCGGAAGGAATTATGACAAgaataaattgaagaatatGTATGATAATTTGAGAAAGGAATGGAGAGTATGGTATACCTTATTTGGAAAAGTCACCGGATTAGGGTGGAATAGTGAGAAGAATACTGTTGATGCACCGGATGAGTGGTGGGAGAACAAAGTATTGGAAAATCCTCTATATGGAAAATTTAGAGACAAGGGACTTCCATTTGCTAACGAACTAACCACACTTTTCAAGGATGTAGTGGCTAATGGAGAGTTTGCTTGGGCACCATCAAGTGGCATATTACCACCTAATGGGCACTTGGGaaacgatgatgatgatgatgatgtgcaGCACCCATGCCTAAAGAATCTTGGTTTGGATGTGGAGGAAGGCTCGGGTGATAGTGAAGATGCAAGTGTTGGAGCAACAACCGAATTTggaaatattaatttgaatacTTCACAAGGAGATGCTAGCCAAGATCATCATTCTCAGgTAAGCCATCATGCTCGCAAAACAAGAAGACGGTTAGCTCGCCAGAAGAAAGCCGTTAAGATTTTCCCAAAGCCTACAGCTGGACCTCTTAGACCTGTTGTTCATGGTCAGACAGTGAAATACAACATGAAACTCAGAGCTGGGAAAGGGTTTTCTCTCGAAGAGTTGAAGGCTGCTAATATTCCAAAAAAGCTTGCTCCAACTATTGGCATTGCTGTTGATCATCGCCGCAAAAATCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGTTGAAAACATATAAGGCCAAATTAGTTGTGTTCCCAAGGCGGGCTCGTAAGGTCAAGGCTGGCGATTCTAGTCCCGAGGAACGTGCAAATGCCACACAAGTTCAGGGTCCATTCTTGCCCATTGTGAGGGAACAGCCATCTGTCGAACTTGTTAAGATTACTGATGAAATGAAGGCAGTCAAAGCATATTATAAGCTTCGTCTTGAACGCACTAATCAACGCCATTTTGGTGCCCGATTAAAGAGAGCAGCTGAAGCAGAAAAGGAAGACAAAAAATAG 1221 0.407 MDTHKKKVLAVPPSTNDKANWVDLKATEIFIKTCFDQITKGERVGTCFTKKGWKGIVSQFNALTGRNYDKNKLKNMYDNLRKEWRVWYTLFGKVTGLGWNSEKNTVDAPDEWWENKVLENPLYGKFRDKGLPFANELTTLFKDVVANGEFAWAPSSGILPPNGHLGNDDDDDDVQHPCLKNLGLDVEEGSGDSEDASVGATTEFGNINLNTSQGDASQDHHSQVSHHARKTRRRLARQKKAVKIFPKPTAGPLRPVVHGQTVKYNMKLRAGKGFSLEELKAANIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSSPEERANATQVQGPFLPIVREQPSVELVKITDEMKAVKAYYKLRLERTNQRHFGARLKRAAEAEKEDKK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02765 406 PANTHER 60S RIBOSOMAL PROTEIN L13 225 406 - -
Tsu04g02765 406 Gene3D - 366 406 - -
Tsu04g02765 406 PANTHER 60S RIBOSOMAL PROTEIN L13 225 406 IPR001380 GO:0003735|GO:0005840|GO:0006412
Tsu04g02765 406 Hamap 50S ribosomal protein L13e [rpl13e]. 244 327 IPR001380 GO:0003735|GO:0005840|GO:0006412
Tsu04g02765 406 MobiDBLite consensus disorder prediction 211 231 - -
Tsu04g02765 406 Pfam Myb/SANT-like DNA-binding domain 25 115 IPR024752 -
Tsu04g02765 406 Pfam Ribosomal protein L13e 226 384 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02765 Tsu-Chr4 32114193 32120317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02765 228 391 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 82.927 1.55e-94 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02765 K02873 - gmx:100805957 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01112 05 9728280 9730779 Tsu04g02765 04 32114193 32120317 PCT