Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02764 ATGGCTGACAATGGTGATGATCAACCTTTGTTCAGTAGTAAATTTGGTGTGATACTAATTGCTATGGGTTCAGCTAGTTTTGTGGTAACAATGTACCATCTCATAGTCATTTGTTGCCAAAACTCAGCCGAACAAGCGCGGCAAAACGAGCAACCGGCAACACAAACACCGAGTGTCGAAGAGGGTTGTTTAGGGTCACATCAAATTCCATCTCACAAgtatgagaagaagaaaaagaatgatgaaaatgatgaagatgattgtGTGACTTGTGCTGTTTGCTTGGGAGATTTTGAAGAGGGTGAAGAGTTGAGAACTATGCCTTCTTGCATGCATTCTTTCCATGTACCATGCATAGATATGTGGctaatttcacattttaattgTCCTATTTGTCGGGCCGATGCCACGCCCTCCCCGGTCGTGCCTCGGAGTTTACCGGAGGTTGAATCCACCGAGGTGAATGTTGATCAAGGCATAAATGTGGTGCAAATAGTTGTCGTCCAAAATGATGTGCAAAATAGGTTACCGGTATAG 537 0.3985 MADNGDDQPLFSSKFGVILIAMGSASFVVTMYHLIVICCQNSAEQARQNEQPATQTPSVEEGCLGSHQIPSHKYEKKKKNDENDEDDCVTCAVCLGDFEEGEELRTMPSCMHSFHVPCIDMWLISHFNCPICRADATPSPVVPRSLPEVESTEVNVDQGINVVQIVVVQNDVQNRLPV 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02764 178 SUPERFAMILY RING/U-box 76 139 - -
Tsu04g02764 178 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Tsu04g02764 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 142 IPR044675 -
Tsu04g02764 178 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 142 - -
Tsu04g02764 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 140 IPR013083 -
Tsu04g02764 178 SMART ring_2 91 132 IPR001841 -
Tsu04g02764 178 Pfam Ring finger domain 90 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02764 Tsu-Chr4 32112547 32113083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02764 17 137 C3H Transcription Factor Family AT5G17600 39.394 3.34e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02764 - - lja:Lj0g3v0111029.1 166.392