Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02748 ATGGGATCCAATAGTAGCAAAGCCACTTCTACTACTACTTCTTCTTCAAGGAATTTCAAGAAGAGTTGTTCTAAGGGATTCAAAGGGTTTCACACTTATTGTCTTGGAACTTGTTCTGGATCTCAAGAGAGTGATAATGAAGACAAGGTTTGTGATCAGAATAAAGTACATGGCGGTGATGTTACATATGCTGAGGACAATctatctgaatcagatgaggTGAAATCAGAGTCTTTTGGAAAGGTTAAAGCTAGTAATAGTGACAATACTTCTTGTATGCCTAACATCAACCTTGGTGAGTGTAGTGAAACAAAGATCCCTAACAATACTTTGTCTGGCCGTCATACCAGTTCCGTTCACGCTTCTTCAACTCATTCGTTGAATTCTACTAGTCGATTCCTTTCTCGGTTCGGCATCAGTCCCAGCAATAAAACCTTCAGACTTAGCAGATTTATCGGTTCGAGGGCCTCAAGGCCTTGTCCTATTTCTTCTACAAGTCTCTCAGAATTTGACAATGATGCTGAGCATAATCTACGTCCAGGACCTTGTAGCAGTTTGTTTAACAGAAATGAAACTCCACGAGAAGATATTCCTAATAATTTAAGGTCAAATGTAACAGGATCAGGTTTGCCTTGCAACATTCAGAGCAATCTCAGTGGTGGCATTGGTGCAAGAGATGAGTTGGATGTAAACTTATTTTCTACGAGAATTCGAGCAGAGACAGAACATATTGAGACTAGACATGTAGATCGACGAAATGGAGCTCGAGAACCAGTTCACCAGAATGTTCGATTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCGATCAACATTATCTGATCTTACCTTTTTCCCTTTACAACAAGAGAGAGAACTAAGAGATGATAGTCAGAATACTCAAATGCAAGCAGTGGAGGCAGATTCAAGAGTGTCCCCATCGAATCATAGCGATATTAATTCTTCTACATCTAGATATCCTCCATCTAGCATGTCTAACTCCATGTTTAGCAATCAAAACTATGACGTTGAGACCTCACGATTGCGAGAAGGTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCACAGGTTCGTTCTCTTCAGCGTTTGGGTAGCCGGTATGAAAATCAATCTGCACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGCCGGTTAAGAAATCGTGACACTAATTCAAATGATGATACCGGTGCTAGAGCTAGCATATCAAGAATTGTTGTACTTGCGGAAGCCTTATTTGAGGTTCTAGATGAAATCCACCAGCAATCTGTGGTTTTATCTTCCCATCCTTCTGTATCTTCTATTGGATCCGTTCCCGCACCTGTCAATGTTGTCGAATCATTGCCTGTCAAGTTATATGAGAAGTTACATAAAGAAGTTACACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGTGTGCGAGTTCTGCCTTGTCATCATGAATTTCACAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTCGGGGGAACATCTGCATTTCTGGCTCACCGCTGACTCGGAACTTTAGCGGCTAG 1653 0.409 MGSNSSKATSTTTSSSRNFKKSCSKGFKGFHTYCLGTCSGSQESDNEDKVCDQNKVHGGDVTYAEDNLSESDEVKSESFGKVKASNSDNTSCMPNINLGECSETKIPNNTLSGRHTSSVHASSTHSLNSTSRFLSRFGISPSNKTFRLSRFIGSRASRPCPISSTSLSEFDNDAEHNLRPGPCSSLFNRNETPREDIPNNLRSNVTGSGLPCNIQSNLSGGIGARDELDVNLFSTRIRAETEHIETRHVDRRNGAREPVHQNVRFSRTLSVGRLRDRVLRRSTLSDLTFFPLQQERELRDDSQNTQMQAVEADSRVSPSNHSDINSSTSRYPPSSMSNSMFSNQNYDVETSRLREGRYQDLLEHRSNFLERRRRIRSQVRSLQRLGSRYENQSAHERSCILSGQHRSARCMCRLRNRDTNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPVNVVESLPVKLYEKLHKEVTQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGNICISGSPLTRNFSG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02748 550 MobiDBLite consensus disorder prediction 183 198 - -
Tsu04g02748 550 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g02748 550 SMART ring_2 492 533 IPR001841 -
Tsu04g02748 550 MobiDBLite consensus disorder prediction 303 342 - -
Tsu04g02748 550 MobiDBLite consensus disorder prediction 297 342 - -
Tsu04g02748 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 538 IPR013083 -
Tsu04g02748 550 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 549 - -
Tsu04g02748 550 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 549 - -
Tsu04g02748 550 SUPERFAMILY RING/U-box 474 539 - -
Tsu04g02748 550 Pfam Ring finger domain 491 534 IPR001841 -
Tsu04g02748 550 MobiDBLite consensus disorder prediction 171 198 - -
Tsu04g02748 550 CDD RING-H2_PA-TM-RING 491 534 - -
Tsu04g02748 550 ProSiteProfiles Zinc finger RING-type profile. 492 534 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02748 Tsu-Chr4 31765323 31769135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02748 249 538 C3H Transcription Factor Family AT5G45290 62.752 4.84e-108 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02748 - - cam:101492704 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02748 04 31765323 31769135 Tsu04g02748 04 31765323 31769135 ECH
Tsu05g01073 05 9425453 9429348 Tsu04g02748 04 31765323 31769135 PCT