Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02705 atggCTGCAAATGATGGAGATATAAATGGTGAAGAATTGGCTAGTTGTAATAATGTCGTTAACGAAGAAGGAAAAGAGGACATGGATACTTATAAGGATATTAATGAATTGACAGATGATGATATGGAGTTTGATTCAGAGGAACATGctatacatttttataaaagctttgCAGAATTTCATGGGTTTGCAATGAGAAAAGATGATGTAAGacgtgatgatgatgataagaTAGTTGTTCGTCAATTAGTTTGTAATAGAGCGGGTAAGAATAGTAAGAAGGAGGATTGTGGAAAAGTTCTGAAGTCGACCACTCGAACCGATTGTCGTGCAAGGATTCGAATAAACTTAAATGTTGAGACTGGTAAGTGGACAGTTTTTGCATTTGAGTCCCTTCATAACCATCCACTAACGCCGACACATTATGTTCATCTGATTCCTAAGTATCGTCGATTGAGTGAATCTGATAAAGTCCTTGTTGATGGCCTGCACAAACAGGGTGTTATAACTAGtcatattttgggttttatgttGGCTCAGAAAGGTGGTCATGAGGGTCTGGGATTTTGCAAGAGAGGTGTTTAG 585 0.3453 MAANDGDINGEELASCNNVVNEEGKEDMDTYKDINELTDDDMEFDSEEHAIHFYKSFAEFHGFAMRKDDVRRDDDDKIVVRQLVCNRAGKNSKKEDCGKVLKSTTRTDCRARIRINLNVETGKWTVFAFESLHNHPLTPTHYVHLIPKYRRLSESDKVLVDGLHKQGVITSHILGFMLAQKGGHEGLGFCKRGV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02705 194 Pfam FAR1 DNA-binding domain 52 138 IPR004330 -
Tsu04g02705 194 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 21 152 - -
Tsu04g02705 194 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 21 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02705 Tsu-Chr4 30877705 30878289 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu04g02705 FAR1 4.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02705 - - ccaj:109792835 164.081