Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02695 ATGAATGACATTGTCTCCCATATATGCCGAGAAGAAAATCAAGTTGCTGACTCCCTAGCTAACATTGGTTGTAGTTTAACTTCCTTTACTTCTTGGCTACCTCCTCTACTAATTGTAGATAGTTTAATTAGAAATAAACATGgCGTCAAAATGTCAAGGCCATTTGACTTCATCAAGGATCTGAACAAGGAAAGGGATATTTGGAAAATAGCTGTAAGAGTAATTGATTCTTGGACGGTTGTAGGCACTAATGGTCATCCACATCTAGAAATGGTTATTGCTGATGAAAAGGGTGATCGTGTTAAAGCCGTTACTCGCTTTAAGGAGTATGAACATTGGAAGTCCTATATTGTGGATCAAAAGATCTATGTTTTGTATAACTGCCATGTTTATGACAACGATTCAGGTTTCAAAGTATGTGATGGTCCTTTCAAAGTTGTGTTTGGTACCGGTACTCGCTTTCAAGTAGATGATGGAATAACAAATATTCCTCCTCATGAATTTCGCTTCAAAAGTTTTAAGGAAGTTTTGGGTGGAAAGTTTAAAATCAATGTTTTGTACGaaatcatTGGAGTCATTCATGAAGTTGTCAAAAACCAAAACTATGCTAATGGGAAAAAACCATGCACTAATTTAATCCTAGCCAATGAAAgtGGTGAAATGGTTGATGTAGCACTGTGGGAAGCTTTTTCCACTCAATTAATGACCTACATATCTGATCGCAAAGAGAAGGGCCCAATAGTGTTAATTCTAACACATGCTCAGTGCAAACTAGGAGATAATGGAAGACCAAGCTTTTCTAACAATTGGACAGGGTCGAAGCTGTTAATCAATGACAAACACCCAGTTGTTGCCAAGTTTAAGTCTTCATATAAAGACATTGAAAAGTCTCAAGCTGCTACTAAAGACTTTACTCAGATTTCGTCTTCCTCTCAAGTAACTAACAATGACGATTTCTCAAACATGAGTCAGGTCAAATCAATTGCTCAAATGAAAGACACTCAAAAGGACTCATACTGCGTTACTATTGGAACTTCTAAAAAATTCAATCCTAATCAATATGGTTGGTATTATGAGAGTTGCTCCAAATGCACTAAATCCTCAAGGGGTATGGGGGATCAATATAAATGTGCATGTGGTGAAGTTGTCAAAGCATCAATTGCTAGGTACAAAGTTGTTGTTCAAGTTGAATTCCAAGGTCATAAGGCTGATTTTGTCTTTTGGGATAATGAATGTCATGGTATTATTGGTACTACTGCTGAAAAACTAAGGCAAGAAATGAAGCAGGTTGGTGAAGATGATCCTAAAATCTATCCTGCTGACCTTGATAAGCTACTCAACGTGGAGTTTGCCTTTAAAGTCAAGTACCAACCTCACTATCATCAAGCTTCCATTAATAAGCTTTCTGATGATCCCACCGTTCTTGCCAAAATCAAGCTTCTCATGAATATCACTCCTACACAATCTGCTGATGAAGTGTCTAAACATCCTTCCATTTCTGAAAAGGAGAAGGATGAATGTTCAGAGTCTCTCAACTTTCCCTCGCAATCACTTTCCGCATGTGGTGACAATGATTTTGAGGCGGTTTCAAACAAGACACCTGCTAAGCGTCCTTCTCCAGCTGCAACAGTTGACGATATTGCATCTCCTTCTATCGGAACAACTAAGCAGTCATCCACAAAGACAAAGCCTACAAAACATGTCAAACTTGAATGA 1716 0.3788 MNDIVSHICREENQVADSLANIGCSLTSFTSWLPPLLIVDSLIRNKHGVKMSRPFDFIKDLNKERDIWKIAVRVIDSWTVVGTNGHPHLEMVIADEKGDRVKAVTRFKEYEHWKSYIVDQKIYVLYNCHVYDNDSGFKVCDGPFKVVFGTGTRFQVDDGITNIPPHEFRFKSFKEVLGGKFKINVLYEIIGVIHEVVKNQNYANGKKPCTNLILANESGEMVDVALWEAFSTQLMTYISDRKEKGPIVLILTHAQCKLGDNGRPSFSNNWTGSKLLINDKHPVVAKFKSSYKDIEKSQAATKDFTQISSSSQVTNNDDFSNMSQVKSIAQMKDTQKDSYCVTIGTSKKFNPNQYGWYYESCSKCTKSSRGMGDQYKCACGEVVKASIARYKVVVQVEFQGHKADFVFWDNECHGIIGTTAEKLRQEMKQVGEDDPKIYPADLDKLLNVEFAFKVKYQPHYHQASINKLSDDPTVLAKIKLLMNITPTQSADEVSKHPSISEKEKDECSESLNFPSQSLSACGDNDFEAVSNKTPAKRPSPAATVDDIASPSIGTTKQSSTKTKPTKHVKLE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02695 571 MobiDBLite consensus disorder prediction 495 509 - -
Tsu04g02695 571 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 66 457 - -
Tsu04g02695 571 MobiDBLite consensus disorder prediction 489 571 - -
Tsu04g02695 571 MobiDBLite consensus disorder prediction 510 526 - -
Tsu04g02695 571 SUPERFAMILY Nucleic acid-binding proteins 54 163 IPR012340 -
Tsu04g02695 571 SUPERFAMILY Nucleic acid-binding proteins 168 292 IPR012340 -
Tsu04g02695 571 PANTHER REPLICATION FACTOR A 1, RFA1 66 457 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu04g02695 571 Gene3D - 54 155 IPR012340 -
Tsu04g02695 571 Gene3D - 161 303 IPR012340 -
Tsu04g02695 571 CDD RPA1_DBD_A_like 69 154 - -
Tsu04g02695 571 Gene3D - 304 480 IPR012340 -
Tsu04g02695 571 SUPERFAMILY Nucleic acid-binding proteins 323 462 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02695 Tsu-Chr4 30731732 30735222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02695 49 432 Core DNA Replication Machinery Family AT5G08020 22.500 2.39e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02695 - - mtr:MTR_6g464080 522.702