Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02694 ATGGATACTAATAAACTCATCAAAGACTTGGAAGCAAAGCTTGCTAGAAGTCGCAGATATCGTATGCTCAAGAACAAGCGATCCAAAATTTCTAACAATAACCATTTACAACCTTTGTCTAACATTGTAGGAACTACTCCACAGTTTAACACATGTCCAGCATTGCCAATTGTTCATACCTTACCCCCTTCTGctacaaatatttttacaaGTCAAAACAGAGTGAATCCGTTCAACAGAAAACCTCTGCAAGACATTACCCAATCACAACaacatgatattttgttttcaaattctGAAGATAATGGAAACATTCAACAACAACCATCTATCCAAAAATTTGATCAAAAGCCCGATGCTTCCACTGCAACAACTCATGTTAAACAATTGATTGCTAATAAACGTCCTCCTCTTGTGCGAAAACGTGGTAGACCGCGGAAAATTGTTGGGCAAACAACAAGTAAAGTCGAAAGCAATACTTTACCAATAACTCCTCAAACGATTGTCAACGATAAAGCATCACAGGAAATCATGAATACCAACACAGTTGATTCTAATATTGGTTCTGCTCCAATTATAACACCATCGCAAGCTGTCAGACCTAAAGATTCAATTCGGTTAAATTTACTGGGAACCAATCTAATGTCAAAATTTGAATGTGTTGGACAACATTCAAACACTAACCCAGTATATAACCATGCACACTCTGACGATGAGTACCAACCTGATACTCATCTCAACAAAGAACCAGAACCTGTCACGTCGAATGCATTTCTACCACAAACTAATGATGATTTTTGTAGTAGCGAAGAAGAAACTGATTCAGATTATAACCCGTTCGAATATCCAGATTCTAATGAAGATTCTGACTCAAATAGCGGCGATGAAGACTTTTACCAGCCAAATGCCTCAACTATCTCTACCTACCACGATCTTGGTGATCCAATAGCAAAGTGTGGTTTTTGTGGAGCATGCATGTGgtttcaagaaagaaaaaaaagagaccGAAATACTCAAATTGTATCATTTCAATTGTGTTGTTGTCATGGAAAGGTACAACTTCCCACACTCAAGGAACCTCCTCAACCATTAAAAGATCTTTTGTTTGATAACAATGATGCTGATAGCAAGAAATTCCAAAATCAACTCAGAACTTACAACATGATGTTTGCATTTACATCACCTGGAGCTACATTGGATAACAGATATAACACTGGCAGAGGTCCTCCAAACATTCGAATTCAAGGCCAAACATGTCATAGGATTGGTAGTTTATTGCCTAAAGTTGGTCAGCCTCCAAGATTTGCACAACTGTACATATATGATACAGACAACGAAATTGAAAATCGAATGCAAGGTCTAAGCAATTCCAACAAAATTGATCCACTCATTGTTAAAAAATTGTCCGACATGTTGTATCAACATAACACACATGTTAAATCGTTTAAAATGGCAAGAGAATTCTTAACTGAAGGAGATGTACAAGATCTTAAACTAAGACTGATATCTGATCGGAAGACAGATGGAAGAATCTACAACCATCCAACTGTCTCTGAAGTTGCAGCACTCATTGTTGGGGATGTTGACTATGCTGAAGAAAGGGATATTATCATAAAAACTCAAGGTGGTCAACTCCAAAGAATCGATGAATTCCATGCTAGCTACTTATCTTATCAGTATCCTTTACTTTTTCCTTATGGTGAAGATGGATATAGACCAAAAACTGCTCACAGAGATGAAGAGGATCATGagattgaagaaactgaagttaCTAAACGAAATAGACTCACCATAAGAGAGTGGTTAGCGTATAGGATACAAACAAGATCATTTGAAGCCAAAACCTTATTATCTTCCAGAAGACTATTTCAACAATTCTTAGTTGACGGTTTCTCAATGTTGGAGTCTGAAAGACTTAAGTGGCTTGGTAATAATCAGTCCAAATTAAGAGTTGCTAAGTATGACAGCCTAGCAGGACAAACATCTCAAAATGACATACAAGGTTCAACCATCGGTACAAGAGTTGTCTTACCGTCCTCTTATGTTGGTGGTCCAAGGTTTATggatcaattatattttgatggcATGGCTATATGTAGTAAGGTTGGATTTCCTGATCTATTCATCACTTTTACTTGCAATCCCAATTGGCCAGAAATACAACGACTGTTGGCACCTCTTCGTCAAAAGGCACCTGATCGACCTGACATTGTCTCAAGaatatttaaaatgaaatttgatgaaCTTTTAGCCGATTTAACTAAAAAGGGAATGTTGGGAAAAGTACTTGCATATATGTATACCATAGAGTTTCAAAAGAGAGGACTACCACATGCCCACATACTACTCTTCTTGCATCCTTCAAGCAAGTATCCCACTCCTAATGACATCAACAAAATCATTTCCGCTGAAATACCAGATCCTGTCAATGATACTCCGTTGTACAACTTGGTCAAGACTCATATGATGCATGGTCCCTGTGGTGTAGTCAATGATCTGTCACCTTGCATGAAAGATGGTAAATGTTCAAaatattatccaaaaaaattccAACCAACAACTGTTGTTGATCAAGATGGTTTTCCTGTTTATAGAAGAAGGGATAACGGTTATACAATTGACAAAAATGGATACATTAACAAAGGCTCAGATCGAATAAGTGATGTCATCGTTCCATCTGACAACAATTCATCATCTCAACAGTTGCCTCacaatgaaattaaacaatatcTGGATTGTAGATACATATCTCCGAGTGAGGCGTGTTGGAGAATATTTTCATATTCCATACATGGTAGAAAACCAGCTGTTGAGCGAATGTTTTTTCATGATGAAGGACAAAACTCGGTTTACTACAAAGACTTTGAGAAAATTGGAAATGTTTTACTTAAGCCGAGTGTTACCGAATCAATGTTCACATCATGGATGGAAGCCAATAAAATTTATCCAGATGCCAGGTTGCTAACTTATGGAAGTTTTGTGGAAAATTTATTGATGTGGGTTCCGCCCACTACTGGTGAATTGTATTATTTGCGAATGATGTTGACCATTGCAAAGGGACCAACAAGTTATAAAGAGATCAAATTTGTGAAAGGAATTCAATATTTAACATATAGAGAAGCATGTTTTGCAATGGGATTTCTTGGTGATGATAGGGAGTACATTGAAGCCATCAAGGAAGCACATCAATGGGGTTCCGGTGTTTTTTTGCGAAAGTTATTTGTAATACTGCTTCTAACTGAATCCATGGATAGACCCAATTATGTCTGGAGTAAAACTTGGCAATGGTTATGCGACGGAATATTATATAATCATAGACATATCGCTCAAAACCAAGATTTATTGCTCACAGATGAAGAACTGCAGCATCTCACGCTAATTGAGATTGAAAAACTGATGCAAACAAATAATAGAAGCTTAAATCAGTTTAAATGCATGCCTTTTCCCACCGGCTATGTCAATGATTTCTTGGGAAATCGATTGCTATATGATGAAAGAAGTTATGACCCTGtgcaacaaaatcaaatataccaACAATTGTTTGCCACACTAACAGATGAACAAAGGGGCATATTTGAACAAATCATGCAATCTGTTACAAATCAAAAGGGTGGAGTTTTTTTCCTATACGGTTATGGCGGTACATGCAAAACTTTCATGTGGAACACCCTAGCTGCCGCTATACGATCAAAACGTCACATTGTGCTGACAGTTGCATCTAGCGGTATTGCGTCTTTACTACTACCAGGTGGAAGAACAGCTCATTCAAGATTCAAAATACCAATACCGACACTTGAAGGAGCAATTTGCAAAATTGACAAAGGAAGTGATCTTGCAGAATTGTTAAAATTGACACAGTTAATCATTTGGGATGAAGCACCAATGGCACATAAATTCTGTTTTAAAGCTCTGGATAACTCTTTAAAAGATATCATGAGCACAGCAAATGGTCCATCAACAGAAATTTTTGGTGGAAAAGTAATTGTTTTCAGTGGTGATTTTAGACAAATACTACCCGTCATACCTAGAGGTAGTCGATCCGATATTGTCCATGCAACTATTAATGCCTCTCACATTTGGGACCATTGCACAGTTTTCAAACTCACCAGAAACATGCGGCTACAAAACCAACAGACTCCGCAAAACTCGGAAGAAATTAGACAATTCTCAGATTGGATATTAAAAGTTGGTGATGGACAATTAGAAGAACCAAATGATGGCATTCAAGATATTCCAATCCCTGATGaacttttaatttcaaattttgttgatCCCATTGATGCTATTTTAAATAGCACATATCCGGAATTACTAACTCATTTTCAAGATGTTGATTACTTGAAAAGTAGAGCTATTTTAGCATCTACAATTGAAGTTGTTAATGAAATCAACGATTATATTCTTAAAATCATTCCAGGTGAAGAAATGGAATATTTAAGCTCTGATTCAATTGATCGAACTGAGGtcaatgataatgatgtttttgaacaaatcaCACCAGAATTCTTACACTCTCTTCATACATCTGGATTACCTAATCATTCaataaaactcaaaattggAACACCGATTATGTTGCTCAGAAATATAGATCAAATGCAAGGATTATGCAATGGAACAAGGTTAACTATTACAAGACTTGCAGATCATGTGATTGAAGCCAAAATTATAACTGGAAAAAATATTGGGGACTTGATCTACATTCCAAGAATGCCAATGTCACCATCACAATCACCATGGCCGTTTAAACTGTTGCGGAAACAATTTCCAATTATGGTATCTTTTGCAATGACGATTAACAAATCTCAAGGCCAATCCTTAGATTATGTTGGTTTGTACTTGCCAAGAGAGGCTCAAATCGAAATTCCCCAACCTTTTAAAAATGCTTGGTTTCATCAACTAAAAGTACATGATCATGGCTGGATTATCACTAAAACAAGACAGAAATTCTTAGTGCATATGCATCTACACAAACCTGATTCGTATATGTCGTCTGGAATCATAATAGCAACACAATTTGGATTCAATGAACCAACAGAAGTCATCCTCGAATACCTTGGTTCTGATAATCGTTTTGAAATTCACGATGTCAAAATAGGAATTAATGAAATCCCCATTGAaaataattctgaaactgataaTGCTACAAATTTTTCTGCTAACAACACCACTCCTCCAGTAGCTTTCAATCCTATCATGACTGCTTCTGAAATTAACTCTTTCCAAAGAGTTGATTTCAACCAAGACAATGTACACACTTGGATTAAGAAAATCAACATCACACCTGGGAATGGAAATAATATTCAACCTTTGAATATTCCTAGAGAATTTGCACTCCAAGCATTAGGAGATGCTACATCAATTGTCTTACAGTCTATGCACTCCAATGAATTAATCAAATGCAAGATCATCACTGCTAAAAGAAGTGAGACACaggttgaaaaatatttaagcaGCGGATGGCACAAATTTGTCAAGGACAACAACATTAAAGCAGGAGATAAGTTTATCTTGAAACTTCCTCATCATAATGCGACTGCAATACAAGCTGAAATTGTTCGTGGAAACAACTCAAACTAA 5580 0.352 MDTNKLIKDLEAKLARSRRYRMLKNKRSKISNNNHLQPLSNIVGTTPQFNTCPALPIVHTLPPSATNIFTSQNRVNPFNRKPLQDITQSQQHDILFSNSEDNGNIQQQPSIQKFDQKPDASTATTHVKQLIANKRPPLVRKRGRPRKIVGQTTSKVESNTLPITPQTIVNDKASQEIMNTNTVDSNIGSAPIITPSQAVRPKDSIRLNLLGTNLMSKFECVGQHSNTNPVYNHAHSDDEYQPDTHLNKEPEPVTSNAFLPQTNDDFCSSEEETDSDYNPFEYPDSNEDSDSNSGDEDFYQPNASTISTYHDLGDPIAKCGFCGACMWFQERKKRDRNTQIVSFQLCCCHGKVQLPTLKEPPQPLKDLLFDNNDADSKKFQNQLRTYNMMFAFTSPGATLDNRYNTGRGPPNIRIQGQTCHRIGSLLPKVGQPPRFAQLYIYDTDNEIENRMQGLSNSNKIDPLIVKKLSDMLYQHNTHVKSFKMAREFLTEGDVQDLKLRLISDRKTDGRIYNHPTVSEVAALIVGDVDYAEERDIIIKTQGGQLQRIDEFHASYLSYQYPLLFPYGEDGYRPKTAHRDEEDHEIEETEVTKRNRLTIREWLAYRIQTRSFEAKTLLSSRRLFQQFLVDGFSMLESERLKWLGNNQSKLRVAKYDSLAGQTSQNDIQGSTIGTRVVLPSSYVGGPRFMDQLYFDGMAICSKVGFPDLFITFTCNPNWPEIQRLLAPLRQKAPDRPDIVSRIFKMKFDELLADLTKKGMLGKVLAYMYTIEFQKRGLPHAHILLFLHPSSKYPTPNDINKIISAEIPDPVNDTPLYNLVKTHMMHGPCGVVNDLSPCMKDGKCSKYYPKKFQPTTVVDQDGFPVYRRRDNGYTIDKNGYINKGSDRISDVIVPSDNNSSSQQLPHNEIKQYLDCRYISPSEACWRIFSYSIHGRKPAVERMFFHDEGQNSVYYKDFEKIGNVLLKPSVTESMFTSWMEANKIYPDARLLTYGSFVENLLMWVPPTTGELYYLRMMLTIAKGPTSYKEIKFVKGIQYLTYREACFAMGFLGDDREYIEAIKEAHQWGSGVFLRKLFVILLLTESMDRPNYVWSKTWQWLCDGILYNHRHIAQNQDLLLTDEELQHLTLIEIEKLMQTNNRSLNQFKCMPFPTGYVNDFLGNRLLYDERSYDPVQQNQIYQQLFATLTDEQRGIFEQIMQSVTNQKGGVFFLYGYGGTCKTFMWNTLAAAIRSKRHIVLTVASSGIASLLLPGGRTAHSRFKIPIPTLEGAICKIDKGSDLAELLKLTQLIIWDEAPMAHKFCFKALDNSLKDIMSTANGPSTEIFGGKVIVFSGDFRQILPVIPRGSRSDIVHATINASHIWDHCTVFKLTRNMRLQNQQTPQNSEEIRQFSDWILKVGDGQLEEPNDGIQDIPIPDELLISNFVDPIDAILNSTYPELLTHFQDVDYLKSRAILASTIEVVNEINDYILKIIPGEEMEYLSSDSIDRTEVNDNDVFEQITPEFLHSLHTSGLPNHSIKLKIGTPIMLLRNIDQMQGLCNGTRLTITRLADHVIEAKIITGKNIGDLIYIPRMPMSPSQSPWPFKLLRKQFPIMVSFAMTINKSQGQSLDYVGLYLPREAQIEIPQPFKNAWFHQLKVHDHGWIITKTRQKFLVHMHLHKPDSYMSSGIIIATQFGFNEPTEVILEYLGSDNRFEIHDVKIGINEIPIENNSETDNATNFSANNTTPPVAFNPIMTASEINSFQRVDFNQDNVHTWIKKINITPGNGNNIQPLNIPREFALQALGDATSIVLQSMHSNELIKCKIITAKRSETQVEKYLSSGWHKFVKDNNIKAGDKFILKLPHHNATAIQAEIVRGNNSN 1859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02694 1859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1161 1373 IPR027417 -
Tsu04g02694 1859 MobiDBLite consensus disorder prediction 248 266 - -
Tsu04g02694 1859 Gene3D - 1713 1857 IPR015300 -
Tsu04g02694 1859 Pfam PIF1-like helicase 1184 1547 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu04g02694 1859 MobiDBLite consensus disorder prediction 267 294 - -
Tsu04g02694 1859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1322 1619 IPR027417 -
Tsu04g02694 1859 Gene3D - 1181 1363 IPR027417 -
Tsu04g02694 1859 Pfam Helitron helicase-like domain at N-terminus 601 783 IPR025476 -
Tsu04g02694 1859 PANTHER ATP-DEPENDENT DNA HELICASE 878 1617 - -
Tsu04g02694 1859 SUPERFAMILY DNA-binding pseudobarrel domain 1755 1843 IPR015300 -
Tsu04g02694 1859 CDD B3_DNA 1755 1840 IPR003340 GO:0003677
Tsu04g02694 1859 MobiDBLite consensus disorder prediction 229 302 - -
Tsu04g02694 1859 PANTHER UNCHARACTERIZED 878 1617 - -
Tsu04g02694 1859 ProSiteProfiles B3 DNA-binding domain profile. 1756 1856 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02694 Tsu-Chr4 30718358 30730332 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu04g02694 PIF1 3.3e-143 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02694 - K05758 vun:114163467 1613.59