Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02682 ATGACTCGCACACTTAGAACATTACAATCTATTTCCTCCGCCGCACCACCGCCGGAGTCCGCCGCTTCATTAGAATCCGACTTTGTAGTCATCCTAGCCGCTCTCCTCTGTGCTCTAATATCCGTTGTGGGTCTAACCGCCATCGCCCGTTGTGCATGGCTCCGCCGTGGTCCGGTCGCCGGAGCTTCACCGGCGACGGTGGTCGCCAACAAAGGTCTTAAAAAGAAAGTTCTCAATTCACTTCCAAAATTCACTTACAGTGATGGCAGTCCCGGAAAATGGGTAGTCTCGTCGGAATGCGCCATTTGTCTCTCGGAGTTTACCGCCGGTGAAGAGGTCCGGGTACTTCCTCAGTGTGGTCATGGATTCCACGTGGCATGTGTTGACACGTGGCTTGGGTCTCACTCTTCTTGTCCTTCTTGCCGTGCTCCTTTTGCTGTTGCTAGGTGCCAGAAATGTGGCCTTTATCAGCCTACACCTTCCGGTGATGTTGCCGGTGAAACGGAGCCGAAGTCGAGCAGCGGCGAGAATGGTGAAGTTGTTGTTAATGTTAATTGTGTTGGTGAGAGTGTTAATAGGCATAGTCACGGTGTTTATAATGGCTTCTTGCCTTAA 615 0.5171 MTRTLRTLQSISSAAPPPESAASLESDFVVILAALLCALISVVGLTAIARCAWLRRGPVAGASPATVVANKGLKKKVLNSLPKFTYSDGSPGKWVVSSECAICLSEFTAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPTPSGDVAGETEPKSSSGENGEVVVNVNCVGESVNRHSHGVYNGFLP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02682 204 MobiDBLite consensus disorder prediction 1 19 - -
Tsu04g02682 204 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 186 - -
Tsu04g02682 204 SUPERFAMILY RING/U-box 78 147 - -
Tsu04g02682 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Tsu04g02682 204 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g02682 204 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 186 - -
Tsu04g02682 204 SMART ring_2 100 141 IPR001841 -
Tsu04g02682 204 Pfam Ring finger domain 99 142 IPR001841 -
Tsu04g02682 204 CDD RING-H2_PA-TM-RING 99 142 - -
Tsu04g02682 204 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02682 Tsu-Chr4 30619691 30620763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02682 1 153 C3H Transcription Factor Family AT1G20823 60.241 1.76e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02682 - - cam:101497131 336.65