Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02675 ATGATTAGACTTTGGATTGTGCTGTTGGTGGCTCTCTCCAATCTGTTCTCTCCAACTGTGGTTGGCTTGGATAATTCCACAGTACCTCCATTTGTAAATATTGGGGTTCTCTACTCTTTCAATACCAGTGTTGGTAGAATAGTGAAAATTGCGGTAGAAGCTGCGGTTCATGATATAAATTCTGATCCTTCTATTCTTGGTAACACTAAGTTGAATCTCTCACTGCAAGAAGATTCCAAATATAGAGGCTTTTTGAGCATTGCTGAGGCGTTGCAGCTCATGGCGACACACACTGTGGCCATTATCGGTCCACAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAACTCCAGGTTCCTCTGTTATCATTTTCAGCAACTGATCCTACTCTTTCTTCGCTTCAATTCCCGTTCTTCATTAGAACTGCCTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATTGTAAGCCACTATGGTTGGAGAGAGGTTATCGCAGTCTATGGTGATGACGACCATGGGAGGAATGGAATTGGTGGGTTAGCGGATAAGCTTGCTGAGAGACGTTGCAAGATCTCGTTTAAAGCACCGATGCCTCCTGAGGCAACGAATGAGGAGATTACTGATGTGCTTGTTCAGGTGGCGTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTACTTGGGGTCCAAAAGTGTTGAGCGTGGCCAAGTCTCTTGGAATGATGCAAAATGGTTATGTTTGGATTGCTACTACTTTTCTCACATCTTTTATTGACATAGATAGTCCTCTCTCTTCAGATGCAATGGATAACATGCAAGGAGTTATTGCACTAAGAATGTACATACCAGATTCAAAGCTCAAAAGAGCGTTCTTTTCTAGGTGGACGAATTTGACTAGTGGAAAGGAGGGGAATGGTCCTCTTGGTTTGAGTACTTATGGTATCTTTGCTTATGATACTGTTTACGTTCTTGCTCGTGCCCTTGATACATTTTTCAAACAAGGGAACCGAATTACATTTTCGCACGATCCAAAGATATCAGAAATAAGTGGAGACAGCTTGCATCTTGATGCTGTGAAAATCTTCAACGAAGGAAATCAGTTGCGCAAAAGTATTTACAAGGTTAACATGACTGGTGTAACAGGTCCATTCAGTTATAAATCTGATGGAAACCTTGCTAATCCAGCATATGAGATCATCAATGTGATCGGAACAGGGACTCGCAAGGTCGGTTATTGGTCTAATTACTCTGGATTATCAATTGTTCCTCCAGAAACACTCTATTCAAAACCACCTAATCGTTCCATTGAAAACCAAAAGCTACTCACTGTGTTTTGGCCAGGTGAAACAACCCAGAGACCTCGCGGTTGGGTTTTTCCAAACAATGGAAAGATGTTAAAAATCGGAGTACCGAAAAGGGTTAGTTACCGCGAATTTGTTTCTCAGGTACAATCCACTGATATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTAAGCTTGTTGCCCTATGCTGTCCCCTATAAGTTTGTTCCATATGGTGATGGTCAAAGCAATCCTAGTAACACCGAGCTTGTGCGCCTAATCACTGCCGGGGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATAGAGTCTGGTCTAGTGGTCGTAGCATCGGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTGACACCATTTACACCAATGATGTGGACTGTAACAGCTATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTCTAGAGCATAGACTGAATGATGATTTTAGGGGACCTCCTAAACAACAAGTAGCCACAATTTTGTGGTAA 1902 0.419 MIRLWIVLLVALSNLFSPTVVGLDNSTVPPFVNIGVLYSFNTSVGRIVKIAVEAAVHDINSDPSILGNTKLNLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTAFNDIFQMTAIADIVSHYGWREVIAVYGDDDHGRNGIGGLADKLAERRCKISFKAPMPPEATNEEITDVLVQVALAESRVIVLHTSTTWGPKVLSVAKSLGMMQNGYVWIATTFLTSFIDIDSPLSSDAMDNMQGVIALRMYIPDSKLKRAFFSRWTNLTSGKEGNGPLGLSTYGIFAYDTVYVLARALDTFFKQGNRITFSHDPKISEISGDSLHLDAVKIFNEGNQLRKSIYKVNMTGVTGPFSYKSDGNLANPAYEIINVIGTGTRKVGYWSNYSGLSIVPPETLYSKPPNRSIENQKLLTVFWPGETTQRPRGWVFPNNGKMLKIGVPKRVSYREFVSQVQSTDMFKGFCIDVFLSAVSLLPYAVPYKFVPYGDGQSNPSNTELVRLITAGVFDAAVGDITITTERTRMVDFTQPYIESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGPPKQQVATILW 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02675 633 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Tsu04g02675 633 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Tsu04g02675 633 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Tsu04g02675 633 PANTHER GLUTAMATE RECEPTOR 12 633 - -
Tsu04g02675 633 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Tsu04g02675 633 Pfam Ligated ion channel L-glutamate- and glycine-binding site 488 575 IPR019594 GO:0004970|GO:0016020
Tsu04g02675 633 Gene3D - 148 425 - -
Tsu04g02675 633 Gene3D - 470 582 - -
Tsu04g02675 633 Gene3D - 50 400 - -
Tsu04g02675 633 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Tsu04g02675 633 Gene3D - 583 630 - -
Tsu04g02675 633 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 633 - -
Tsu04g02675 633 SMART GluR_14 473 619 IPR001320 GO:0015276|GO:0016020
Tsu04g02675 633 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Tsu04g02675 633 SUPERFAMILY Periplasmic binding protein-like II 447 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02675 Tsu-Chr4 30478516 30483837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02675 5 633 Ion Channels AT3G51480 55.644 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02675 K05387 - gmx:100788917 1080.86