Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02663 ATGCCGAAAACTAAAGCTGATTCCAAACCTGCTGATAGCAGGTTGAAGCGTAAGGGTGCTGGAACCGGAAGGAAACAGACGAAGAAAGCCGCTAAGGATCCTAACAAGCCGAAGAGGCCACCGAGTGCTTTCTTCGTTTTcatgtCTGAGTTCAGAGAACAGTATAAGAAGGATCATCCAAACAACAAATCCGTTGCCGCTGTCGGAAAAGCTTGCGGTGAAGAATGGAAAAGGATGTCTGAAGAAgACAAAGCTCCCTATGTTGCAAgggcattgaagaagaaagaagagtaTGATGTAACTATTCAAGCTTACAATAAGAAACTGGAAGGAAAAGATGAGGAAGATGGTTCTGACAAGTCAAAATCTGAAGtcaatgatgaagatgaagatgagGaggatgaggatgatgatgacgatgatgagTGA 429 0.3543 MPKTKADSKPADSRLKRKGAGTGRKQTKKAAKDPNKPKRPPSAFFVFMSEFREQYKKDHPNNKSVAAVGKACGEEWKRMSEEDKAPYVARALKKKEEYDVTIQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEEDEDDDDDDE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02663 142 MobiDBLite consensus disorder prediction 105 124 - -
Tsu04g02663 142 Gene3D High mobility group box domain 21 128 IPR036910 -
Tsu04g02663 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 IPR031061 -
Tsu04g02663 142 MobiDBLite consensus disorder prediction 1 42 - -
Tsu04g02663 142 SUPERFAMILY HMG-box 24 108 IPR036910 -
Tsu04g02663 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 - -
Tsu04g02663 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Tsu04g02663 142 MobiDBLite consensus disorder prediction 125 142 - -
Tsu04g02663 142 MobiDBLite consensus disorder prediction 105 142 - -
Tsu04g02663 142 Coils Coil 95 115 - -
Tsu04g02663 142 MobiDBLite consensus disorder prediction 1 19 - -
Tsu04g02663 142 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Tsu04g02663 142 CDD HMGB-UBF_HMG-box 37 103 - -
Tsu04g02663 142 SMART hmgende2 36 107 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02663 Tsu-Chr4 30081748 30083468 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu04g02663 HMG_box 1e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02663 K25507 K22507 gmx:100499992 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02663 04 30081748 30083468 Tsu04g02663 04 30081748 30083468 ECH
Tsu05g00943 05 8196670 8198314 Tsu04g02663 04 30081748 30083468 ECH