Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02652 ATGGCAGCTCGCGCACTTTCTCGTCTGCTCTCTCGCTctatatcttcttcttcttctggaGTTTCTGCTTCTCTGCTTCGTTCATCACTAGGAAGAAAATCTGAAGGATGGACAAACATAAGCAGATTTAGCACTGCTGCAGCTGTTGAGGAATTGATTACTCCACAAGTTTCAATAAATTATACACAACATCTCATAAATGGCCAATTTGTCGATGCCGCATCAGGGAAAACGTTTCCAACTTATGATCCACGCACAGGGGAAGTGATTGCTCGTGTTGCTGAAGGCGATGCTGAAGATATTAACCGTGCAGTATCAGCTGCACGCGAGGCCTTTGATAATGGACCTTGGCCTAAAATGACTGCTTATGAAAGATGTCGTATATTGCTGCGGTTTGCTGATTTGGTTGAGAAACACAATGACGAGATTGCAGCTCTGGAGTCATGGAACAATGGAAAGCTTTATGAACAGGCTGCCAAGGCTGAAGTACCTATGTTTGTGCGTTTATTTCGCTATTATGCTGGTTGGGCAGATAAAATTCATGGATTGACAGTTCCAGCTGATGGAGATTATCATGTCCAGACATTGCATGAACCAATTGGTGTAGCAGGACAAATTATACCTTGGAATTTTCCTCTACTTATGTTTGCGTGGAAAGTTGGACCAGCTCTAGCATGTGGTAATACCATTGTCCTCAAGACTGCCGAGCAAACACCGCTAACGGCTCTTGTTGTCGCAAAACTACTTCACGAGGCCGGTCTTCCCGCAGGTGTTCTGAATATAGTTTCTGGGTATGGCCCAACTGCTGGTGCACCTCTTGCAAGTCATATGGATGTAGACAAGTTAGCGTTCACCGGATCGACAGATACTGGAAAAACTGTACTTGAACTGGCTGCAAGAAGCAATCTTAAGCCAGTGACATTGGAACTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCTGATGTTAACAAAGCTGTTGAAATTGCACACTTTGCTTTGTTCTTTAATCAGGGGCAATGTTGCTGTGCTGGATCACGTACCTTTGTACATGAGCGTATCTATGACGAGTTCTTGGAGAAATCAAAGGAACGGGCTTTGCGACGTGTTGTTGGTGATCCATTTAAGAAGGGTGTAGAACAAGGTCCTCagATTGATTCGAAACAATTTGAGAAAGTGCTTAGGTACATAAAGTCTGGAATTGATAGCAATGCTACTCTTGAATGTGGAGGTGGGAGATTGGGTTCAAAAGGCTTCTTTGTCCAGCCAACTGTATTCTCCAATGTTCAGGATGATATGTTGATAGCAAAAGATGAAATCTTTGGCCCAGTTCAGACTATCTTGAAGTTCAAGGACATTGATGAAGTGATACAACGGGCAAATGCGACGCGTTATGGTTTAGCGGCAGGTGTTTTCACAAAAAATGTGAGCACAGCCAACACTATGATGAGGGCACTAAGAGCTGGAACAGTGTGGATTAATTGCTTTGATGTGTTTGATGCTGCAATTCCTTTTGGTGGTTACAAAATGAGTGGGATTGGTAGAGAGAAAGGAATATACAGTCTTCACAACTATCTGCAGGTAAAAGCTGTGGTGACTCCACTAAACAATCCTGCGTGGTTGTGA 1629 0.4297 MAARALSRLLSRSISSSSSGVSASLLRSSLGRKSEGWTNISRFSTAAAVEELITPQVSINYTQHLINGQFVDAASGKTFPTYDPRTGEVIARVAEGDAEDINRAVSAAREAFDNGPWPKMTAYERCRILLRFADLVEKHNDEIAALESWNNGKLYEQAAKAEVPMFVRLFRYYAGWADKIHGLTVPADGDYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALVVAKLLHEAGLPAGVLNIVSGYGPTAGAPLASHMDVDKLAFTGSTDTGKTVLELAARSNLKPVTLELGGKSPFIVCEDADVNKAVEIAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKERALRRVVGDPFKKGVEQGPQIDSKQFEKVLRYIKSGIDSNATLECGGGRLGSKGFFVQPTVFSNVQDDMLIAKDEIFGPVQTILKFKDIDEVIQRANATRYGLAAGVFTKNVSTANTMMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVTPLNNPAWL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02652 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 76 532 IPR016162 GO:0016491
Tsu04g02652 542 SUPERFAMILY ALDH-like 56 537 IPR016161 GO:0016491
Tsu04g02652 542 CDD ALDH_F2BC 59 534 - -
Tsu04g02652 542 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491
Tsu04g02652 542 Pfam Aldehyde dehydrogenase family 70 532 IPR015590 GO:0016491
Tsu04g02652 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491
Tsu04g02652 542 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 30 542 - -
Tsu04g02652 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 314 503 IPR016163 GO:0016620
Tsu04g02652 542 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 30 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02652 Tsu-Chr4 29981413 29985372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02652 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 78.269 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02652 K00128 - gmx:100811501 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00194 02 1649416 1655029 Tsu04g02652 04 29981413 29985372 ECH
Tsu04g02652 04 29981413 29985372 Tsu04g02652 04 29981413 29985372 ECH