Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02651 ATGAGTACTCATAATTCTAATCAAAGGGATCGCCGCATCCTATCATTCCCAGCAGTTCATCCTTGTGAATCCATATCTTCATCAACACTAATCACTTCTCTAATCACACTCTCACAAACCATATCAAATTTCCAACCTCAATTATTCACAACCCAAAAACGTAACGCAAGAGAAATAATACGTCAAATTTCAATCATTTCAATATTCCTcaaagaaattaaagatacTCAATCTATTATCCCTAACTCAATTATCCTCTGTTTTTCAGAACTTCATTTCACTTTACAAAAAATTCTCTTCTTAATGCAAGATTGTACTCTAGAAGGTTCTAGACTCTTATTACTTGCGAAATCGCAACATGTGTCATTTTTGTTTCGTTCTCTTGTTCGTGCAGTGTCTACTACACTAGATGTTTTACCTTTGCACAAGGTGGCAATTTGCTACGAAGTTAAGGAGTTTGTTGAATTAGTAGCTAAACAAGCAAGAAAAGGTGAATTTGAAGTTGACCCCAGTGACGAATTTGCTACCAAGAAACTTCTTTTAGTTCTGCAACAATTCGAGAGAGGAATTGAACCAAACATGAATACCATGAATGAAATTATTGATTACTTGAAAATAAAAAGCTGGAATGATTGTGACAGAGAAATCAAATTCTTAGAAGATGAGATAAGTTTGTTAGAGAATCGCGATTGTAACGAACGAGAAGTTCCATTGTTGAGTAGCTTAGTTGGGTTTTTAAGCTACTGCAGAGTAGTTATATTTGAATCTCTAGATCAAAATTCTGATGAACTCGAAGCGCCGCGACCCAGTATGGAGATGATTGCCATAACATGTTTGAATCCAGAGGATTTTCGATGTCCAATTTCGCTCGAATTAATGACAGAACCAGTAACAATTTCAACAGGACAAACCTATGATCGTGCTTCAATTCAAAAATGGCTTAAATCAGGAAACACAACATGTCCTAAAACAGGAGAGAATCTTAAGAACACAGAGTTAGTCCCAAACACAACACTGAAGAAACTTATCCAACAATTCTGCTTCGACAATGGTATATCTTTCGCCAGATTTTCTAACCGTAGCCGCGACATAACTAGGACTATTTTACCAGGTAGTTCTGCTGCAGCACATGCTATGCAGTTTCTTTCATGGTTTCTAACACGAAGGCTCGTGTTTGGAACtgagaaagagaagaacaaaGCAGCTTACGAGATTCGCTTGTTAACAAGGTCAAGTATTTTCAATAGAGCATGTTTGATTGAAGTTGGAACTGTTCCACCATTGTTGGAACTTTTAGCTACGGAAGATAAAACGACGCAAGAGAATGCTATCTCTGCTTTGATGAAGCTTTCAAAGCATGAAACTGGGCCTCAAAATATAATAGCCCATAACGGTTTAAAGCCCGTTGTTTATGTACTGAGAAACGGGCTTAGTCTTGAAGCCCGTCAAATTGCAGCTGCTATAATATTCTATCTTTGTTCTGTGAAAGAATATAGAAAAATCATAGGTGAAAATCAAGATGTGGTTCATGGTTTAGTGAAATTGGTTAAAGAAGGAACAACCTGCGGGAAAAAGAACGCAGTTGTTGCGATTTTTGGACTTCTCTTACTTCCTAGGAATCATCAACGCGTGCTTGAATCCGGTGTTGTTCACGCGCTTGTTTCTATTTTGGCTTCTTCGGATAAAGAAGAACTTGTAACTGAAGCTTTGGCTGTTCTTGCTGCACTTGCTGAGAATTTTGATGGAGCCAATGCTGTTTTTGAAGCTTCTGCATTGTCTTTGATTATTGGGATGTTGAGGTCTGCTACTTCGCGTGTTGGGAAGGAACATTGTGCTTCGATTTTGTTGTCGCTGTGTGTTAATGTTGGTGCGGATGTTGTAGGTGTTCTTGCTAAGGATGTTACGGTTATGCCTTTGCTTTATTCGCTTCTTACTAATGGTAATTCTCATGCTGCTAAAAAAGCGCGTTTGCTTATTAAAGTTCTTCAAGATTTCAATGAAACGGCTAGTTCTCGATTGAAAGGTTCATCAATTCTGCGTGAAATGAATGGGTTAGAACTTAGGAATTAG 2070 0.3734 MSTHNSNQRDRRILSFPAVHPCESISSSTLITSLITLSQTISNFQPQLFTTQKRNAREIIRQISIISIFLKEIKDTQSIIPNSIILCFSELHFTLQKILFLMQDCTLEGSRLLLLAKSQHVSFLFRSLVRAVSTTLDVLPLHKVAICYEVKEFVELVAKQARKGEFEVDPSDEFATKKLLLVLQQFERGIEPNMNTMNEIIDYLKIKSWNDCDREIKFLEDEISLLENRDCNEREVPLLSSLVGFLSYCRVVIFESLDQNSDELEAPRPSMEMIAITCLNPEDFRCPISLELMTEPVTISTGQTYDRASIQKWLKSGNTTCPKTGENLKNTELVPNTTLKKLIQQFCFDNGISFARFSNRSRDITRTILPGSSAAAHAMQFLSWFLTRRLVFGTEKEKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLELLATEDKTTQENAISALMKLSKHETGPQNIIAHNGLKPVVYVLRNGLSLEARQIAAAIIFYLCSVKEYRKIIGENQDVVHGLVKLVKEGTTCGKKNAVVAIFGLLLLPRNHQRVLESGVVHALVSILASSDKEELVTEALAVLAALAENFDGANAVFEASALSLIIGMLRSATSRVGKEHCASILLSLCVNVGADVVGVLAKDVTVMPLLYSLLTNGNSHAAKKARLLIKVLQDFNETASSRLKGSSILREMNGLELRN 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02651 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Tsu04g02651 689 PANTHER U BOX DOMAIN-CONTAINING 7 672 - -
Tsu04g02651 689 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Tsu04g02651 689 PANTHER OS07G0532750 PROTEIN 7 672 - -
Tsu04g02651 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Tsu04g02651 689 SMART arm_5 537 578 IPR000225 GO:0005515
Tsu04g02651 689 SMART arm_5 411 452 IPR000225 GO:0005515
Tsu04g02651 689 SMART arm_5 453 494 IPR000225 GO:0005515
Tsu04g02651 689 CDD RING-Ubox_PUB 284 326 IPR045210 -
Tsu04g02651 689 Gene3D - 388 535 IPR011989 -
Tsu04g02651 689 Gene3D - 536 682 IPR011989 -
Tsu04g02651 689 SUPERFAMILY ARM repeat 394 663 IPR016024 -
Tsu04g02651 689 SUPERFAMILY RING/U-box 281 354 - -
Tsu04g02651 689 Coils Coil 209 229 - -
Tsu04g02651 689 Pfam Armadillo/beta-catenin-like repeat 415 447 IPR000225 GO:0005515
Tsu04g02651 689 Pfam U-box domain 281 348 IPR003613 GO:0004842|GO:0016567
Tsu04g02651 689 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Tsu04g02651 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02651 Tsu-Chr4 29960154 29962472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02651 4 667 U-box Gene Family AT1G60190 40.296 8.27e-169 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02651 - - mtr:MTR_4g107010 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02651 04 29960154 29962472 Tsu04g02651 04 29960154 29962472 ECH