Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02642 ATGTGGTTCAGCAGTGCCAAGAGCTGTTTGCCTGAAGAGGGACAGAAATGGGGTTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTTTTTTGCATTGCTTGCATGTCAGTGGGGAAGTGGTTGAATCGACGACAAGCACACTTAGTGCGTGCCCAACAGGGTATCCCTGTGTCTGAATATGGGATTTTGGTTGATATGATCCGCGTGCCTGATTGGGCATTTGAAGCTGCGGGTCAAGAAACAAGGGGCATGGGCCAAGAAGCTGCTGCATATCAACCAGGACTTTACCTATCACCAGCTCAGAGAGAAGCAGTCGAAGCTTTAATTCAGGAACTCCCTAAGTTCATGTTAAAAGCTGTTCCTACTGATTGCAGTGAGTGCCCCATCTGCTTAGAAGAGTTCCGTGTTGGGAATGAGGTTCGTGGCTTGCCTTGTGCACACAATTTTCATGTTGAATGCATTGACGAGTGGCTTAGACTGAATGTGAAATGTCCTCGGTGCCGTTGCTCGGTGTTTCCAAATCTCGATCTTAGTGCCCTATCCAATCTTCGTCCTGATTCCGAACGATCTTCTGCCAGTGTTGTGACAACAACTAGATATGTGAGAGGCCAACCTTCTAGTCAAAGTTACCTGTTAAGGTTACAGGGACTTCTTCGCCCAGTGCGTGCTGAAATTGCAGGGCCAGTTGGTGAAACAGATAATGCTTTGCAAAATGCCGAGAACGGTGTTGTACCTATTGTGACACACAATGCACCAAACAGAGTCCAGGTCTCTTCTGTGGAATGCATGCCTGTCAGTCATTCCTCTCCACAAAGCTAG 822 0.4745 MWFSSAKSCLPEEGQKWGFLIWLLFSYCGLFCIACMSVGKWLNRRQAHLVRAQQGIPVSEYGILVDMIRVPDWAFEAAGQETRGMGQEAAAYQPGLYLSPAQREAVEALIQELPKFMLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRAEIAGPVGETDNALQNAENGVVPIVTHNAPNRVQVSSVECMPVSHSSPQS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02642 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 255 - -
Tsu04g02642 273 Pfam Ring finger domain 127 169 IPR001841 -
Tsu04g02642 273 SUPERFAMILY RING/U-box 110 177 - -
Tsu04g02642 273 ProSiteProfiles Zinc finger RING-type profile. 128 169 IPR001841 -
Tsu04g02642 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 255 IPR044793 GO:0004842|GO:0010182
Tsu04g02642 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 174 IPR013083 -
Tsu04g02642 273 CDD RING-H2_RNF111_like 127 171 - -
Tsu04g02642 273 SMART ring_2 128 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02642 Tsu-Chr4 29843302 29846872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02642 2 255 C3H Transcription Factor Family AT3G47990 70.543 1.31e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02642 K16284 - gmx:100812016 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02642 04 29843302 29846872 Tsu04g02642 04 29843302 29846872 ECH