Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02639 ATGAAGAATTTGTATTGGTTGAAAGAATTTTCTAACAATGTGAGATCAGGGAGGAGACTTTCATTAGGGGAATATAAGAGAGCAGTTTCATGGTCTAAGTATGTTGTTTCTTCTGGAGCAGCTATAAAgggaaatgaagaagatgattggAATGCTGATATGTCTCAGTTATTCATTGGTTCCAAATTTGATTCTGGAAGACATAGCAGGATCTACAGAGGTATCTATAAGAATTTGGATGTGGCTATTAAGCTTGTTAGTCAAcctgaggaagatgaagaattgGCTGCTTTGCTTGAGAGACAATTCACTTCTGAAGTTGCTTTGTTGTTTCGGTTGCGCCATCCAAATATCATTACTTTTGTTGGAGCTTGCAAGAAACCACCAGTGTTCTGTATAATCACAGAATATATGGCTGGAGGGTCATTGAGAAAATACCTGCAACAACAAGGACCACATTCAGTTCCTCTCAAACTGGTTCTTGAACTAGCCCTTGACATAGCAAGGGGAATGCAATATCTTCATTCTCAAGGAATACTTCATAGGGATCTCAAATCAGAAAATCTGTTATTGGATGAAGAAATGTGTGTaaaagtagcagattttggtATCTCATGTTTAGAATCTCAAGCCGGCAGCGCGAAAGGATTCACCGGAACTTACCGTTGGATGGCACCTGAAATGATCAGAGAAAAACGACATACGAAGAAAGTAGATGTCTATAGTTTTGCCATAGTTCTATGGGAGCTAATAACAGGACTCACACCATTTGATAACATGACACCAGAACAAGCAGCATATGCAGTAACTCACAAGAATGCAAGGCCTCCATTACCATTTGATTGTCCATTGGCATTTAGTCATCTGATAAAGAGGTGTTGGTCAAGCAATCCTAATAAAAGGCCGCATTTTACTGAGATAGTATCAATTTTGGAGAGATATACTGACTCACTTGAGCAGGATCCAGAATTTTTCTCTACCTACAAACCAACTCCAAGTAATGTACTTGTTAAATTCTTACCAAAATGTAATAATGCTGATGATAATTTCACTTCTTGA 1059 0.3598 MKNLYWLKEFSNNVRSGRRLSLGEYKRAVSWSKYVVSSGAAIKGNEEDDWNADMSQLFIGSKFDSGRHSRIYRGIYKNLDVAIKLVSQPEEDEELAALLERQFTSEVALLFRLRHPNIITFVGACKKPPVFCIITEYMAGGSLRKYLQQQGPHSVPLKLVLELALDIARGMQYLHSQGILHRDLKSENLLLDEEMCVKVADFGISCLESQAGSAKGFTGTYRWMAPEMIREKRHTKKVDVYSFAIVLWELITGLTPFDNMTPEQAAYAVTHKNARPPLPFDCPLAFSHLIKRCWSSNPNKRPHFTEIVSILERYTDSLEQDPEFFSTYKPTPSNVLVKFLPKCNNADDNFTS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02639 352 CDD STKc_MAP3K-like 65 311 - -
Tsu04g02639 352 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02639 352 Gene3D Transferase(Phosphotransferase) domain 1 140 336 - -
Tsu04g02639 352 SUPERFAMILY Protein kinase-like (PK-like) 45 311 IPR011009 -
Tsu04g02639 352 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Tsu04g02639 352 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Tsu04g02639 352 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Tsu04g02639 352 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Tsu04g02639 352 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Tsu04g02639 352 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Tsu04g02639 352 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02639 352 Pfam Protein tyrosine and serine/threonine kinase 60 311 IPR001245 GO:0004672|GO:0006468
Tsu04g02639 352 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Tsu04g02639 352 Gene3D Phosphorylase Kinase; domain 1 46 139 - -
Tsu04g02639 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02639 Tsu-Chr4 29817667 29820068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02639 30 320 MAP Kinase Kinase Kinase AT1G62400 63.390 3.74e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Tsu04g02639 PK_Tyr_Ser-Thr 2.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02639 - - gmx:100785212 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02639 04 29817667 29820068 Tsu04g02639 04 29817667 29820068 ECH
Tsu04g02639 04 29817667 29820068 Tsu03g02223 03 24207115 24209808 PCT