Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02629 ATGGTTCTTGAGACGAATCTTAGAGAAAACTATGCCTCACAATCACAGCCAATACATTTGCAAGAAAACTACTTAAAGCCAAGGATGAAAGATGAGTTAATACCTTTTGGTGCTCATTCTTCGCAGGGTAATTTCTTGCAAGATTTTCATCATATTGATCAATTTCATGTGCATGGCTCCTCGTCCTCCAATCAAGTTTTTGGGGTCCAAACACAAAATTTTGATCCTTTTGGTAATGCAGAATGTGCAAATACAGATTTTGAAGTTTATGATGGAAAGCCTTTTGGTGAGAATAATATTAATGGTAGTGAGCATGCTCAACTTATTGACAATTTTCAATATGATGGTTATAGTTTGAATATCCCTAGAAGGAATCATCTTGATCTTATGGTTGAAAACCATAGTTATTTTCCCTTTAATAATCCTTCAGAAACCAAGCCATTGAATTATGTTGTACCAGATGATGAAGTTTCAAGCATAACACCGACAAATTATTACCAAAGAGCTGGGTTGAATAGAAATAACAGGTTATTATCTCCTACCACAAGAAGAGCATTTAAAGCAAGGAAGAAATCAAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAAATGGTGGAACAATTTGGAATGAGGAAGTGGTCTCATATTGCTCAGAAGTTGCCTGGAAGAATAGGGAAACAGTGCAGAGAAAGATGGCATAACCATTTAAGGCCTGACATTAAGAAAGACATATGGACTGATGAAGAGGATAAGATATTGATCCAAGCTCATTCAGAAATAGGAAATAAATGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACTGAGAACTCAATAAAAAACCATTGGAACGCAACAAAGAGAAGGCAATATTCGAAAAGAAAATGTCGCTCGAAGTACCCTAGAGGCACTCTTCTGCAGGACTATATCAAAAGCTTGAATTTGGACCAAAATCCACCAAGAGACTTTCGAAAAAAATCTTCGACTAATGCAAAGAAAACAGTTACTTGTAGTACAAGCAAAGCAGCAACACAACAAATTCCTCAGCCACATATTGCAAATGAGTTTTGTCCCAATGACCGACCTGTGCCAAACTACGAgtttaatgatttttgtttggatgataatttgtTTGAAGAAGGGTGTGGTATTGATTCTCTGCTAGATGAAATGTCAAGTGTTCCTACTACGGATGAGAAAGTTgttgaagaaaaacaacaatgTGATAAGGAAAGCACACAAGTTAATCTTGAAGAGCAACAATTTGAGAGACAGGTTGAAATTAAGAAGGAGTTGGATTTGGTGGAGATGATCTCTCAGGTTAATCAAAGTATTAATTGA 1359 0.3554 MVLETNLRENYASQSQPIHLQENYLKPRMKDELIPFGAHSSQGNFLQDFHHIDQFHVHGSSSSNQVFGVQTQNFDPFGNAECANTDFEVYDGKPFGENNINGSEHAQLIDNFQYDGYSLNIPRRNHLDLMVENHSYFPFNNPSETKPLNYVVPDDEVSSITPTNYYQRAGLNRNNRLLSPTTRRAFKARKKSNIVKGQWTVDEDRLLIQMVEQFGMRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQDYIKSLNLDQNPPRDFRKKSSTNAKKTVTCSTSKAATQQIPQPHIANEFCPNDRPVPNYEFNDFCLDDNLFEEGCGIDSLLDEMSSVPTTDEKVVEEKQQCDKESTQVNLEEQQFERQVEIKKELDLVEMISQVNQSIN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02629 452 Pfam Myb-like DNA-binding domain 251 290 IPR001005 -
Tsu04g02629 452 Pfam Myb-like DNA-binding domain 196 242 IPR001005 -
Tsu04g02629 452 Gene3D - 195 248 - -
Tsu04g02629 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 297 IPR017930 -
Tsu04g02629 452 CDD SANT 199 242 IPR001005 -
Tsu04g02629 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 246 IPR017930 -
Tsu04g02629 452 SUPERFAMILY Homeodomain-like 193 289 IPR009057 -
Tsu04g02629 452 MobiDBLite consensus disorder prediction 323 349 - -
Tsu04g02629 452 ProSiteProfiles Myb-like domain profile. 191 242 IPR001005 -
Tsu04g02629 452 CDD SANT 251 293 IPR001005 -
Tsu04g02629 452 PANTHER BNAC07G50190D PROTEIN 121 323 - -
Tsu04g02629 452 Gene3D - 249 310 - -
Tsu04g02629 452 SMART sant 247 295 IPR001005 -
Tsu04g02629 452 SMART sant 195 244 IPR001005 -
Tsu04g02629 452 ProSiteProfiles Myb-like domain profile. 243 293 IPR001005 -
Tsu04g02629 452 PANTHER MYB PROTEIN-RELATED 121 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02629 Tsu-Chr4 29687797 29689658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02629 9 397 MYB Transcription Factor Family AT4G18770 43.721 4.00e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g02629 Myb_DNA-binding 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02629 K09422 - gmx:100816653 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02629 04 29687797 29689658 Tsu03g02246 03 24962863 24964917 ECH
Tsu04g02629 04 29687797 29689658 Tsu04g02629 04 29687797 29689658 ECH
Tsu03g02246 03 24962863 24964917 Tsu04g02629 04 29687797 29689658 PCT