Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02628 ATGCAGGCTACCCTTTTACCTCTAACCCCTTCCCTCTCTCTCTACAAATCTCAATCCTCTCTCTCTTCATCTCTTTCTTCCACTTTCAACCCTtctttctcatcatcatcatggaaacctcttgtttcttcttattcttcttcaaaACTAATCTCTTTGACACCCCTTTATTCCTCCAACCATTTACAAACCAAAGCAGCAACAACCACCGCGGCCGCTGACTCCTCCGACTCCTCCGAAAGCAGCAGTCTATTCAAAGCTTTAGAGCTTGGAATTCTTTTTTGCCTATGGTTCACCTTTAACATCTACTTCAATATCTACAACAAACAGGTCTTAAAGGTTTATCATTTACCTGTAACTCTAACTGCGGTTCAATTTGCTATTGGGACACTCCTTGTAGCATTCATGTGGGGTCTTAATCTTTATAAAAGGCCAAAACTCACTTCTTCACAGCTTTTAGCAATATTTCCATTGGCTTTGGTACATACATTAGGAAACCTTTTCACTAACATGAGTCTTGGAATGGTTGCTGTCTCTTTCACACATACTGTTAAATCAATGGAGCCTTTCTTTTCTGTCCTTCTGTCTTCTATGTTCCTTGGAGAGATGCCTACAGCATGGGTAGTTGCTTCCCTTGTGCCTATTGCTGGCGGTGTGGCGCTGGCATCTGCTACGGAGGCCTCTTTCAATTGGGTTGGGTTTTTGAGTGCAATGGCTTCCAATTTGACGAATCAATCTCGTAATGTTCTTAGCAAAAAGCTCATGGTTAAGAAGGAGGAATCCGTGGACAACATAACACTCTTCTCAATAATAACAGTCATGTCATTCTTCCTATCATTACCTCTGGCTATCTTCATGGAGGGTGTCAAATTTACCCCTACTTACCTGCAATCCGCAGGATTAGATGTTCAACAAGTGTACATGAGATCTCTTCTTGCTGCACTTTGTTTCCACGCGTATCAGCAAGTTGCTTATATGATACTGGAGAGGGTATCACCTGTTACACATTCAGTAGCAAACTGTCTGAAACGTGTGATAGTTATTGTGAGCTCCGTCATTTTTTTCCAAACACCCGTCTCACCAATTAATGCATTAGGAACTGGTATAGCTCTTTCTGGTGTTTTCCTATATTCCAGGGTGACGCGAATTAAGCCTAAGACAGATTAA 1167 0.4019 MQATLLPLTPSLSLYKSQSSLSSSLSSTFNPSFSSSSWKPLVSSYSSSKLISLTPLYSSNHLQTKAATTTAAADSSDSSESSSLFKALELGILFCLWFTFNIYFNIYNKQVLKVYHLPVTLTAVQFAIGTLLVAFMWGLNLYKRPKLTSSQLLAIFPLALVHTLGNLFTNMSLGMVAVSFTHTVKSMEPFFSVLLSSMFLGEMPTAWVVASLVPIAGGVALASATEASFNWVGFLSAMASNLTNQSRNVLSKKLMVKKEESVDNITLFSIITVMSFFLSLPLAIFMEGVKFTPTYLQSAGLDVQQVYMRSLLAALCFHAYQQVAYMILERVSPVTHSVANCLKRVIVIVSSVIFFQTPVSPINALGTGIALSGVFLYSRVTRIKPKTD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02628 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 302 380 - -
Tsu04g02628 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 134 223 - -
Tsu04g02628 388 Pfam Triose-phosphate Transporter family 89 378 IPR004853 -
Tsu04g02628 388 PANTHER SOLUTE CARRIER FAMILY 35 10 383 - -
Tsu04g02628 388 PANTHER PLASTID PHOSPHATE TRANSLOCATOR 10 383 - -
Tsu04g02628 388 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 88 386 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02628 Tsu-Chr4 29682594 29685800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02628 8 386 Antiporters AT5G33320 63.476 2.00e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02628 K15283 - jre:109004219 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02628 04 29682594 29685800 Tsu03g02247 03 24966820 24970907 ECH
Tsu04g02628 04 29682594 29685800 Tsu04g02628 04 29682594 29685800 ECH
Tsu04g02628 04 29682594 29685800 Tsu03g02247 03 24966820 24970907 PCT