Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02608 ATGCCTGTAAATCAATTGACCCTTTTTTTCTTATCCTTTTTCCTTTTACTTCCACAACATTCTTTTCTATCTTTTGCAGTAAACCCACAAGGGGAAGCTCTTCTTTCATGGAAGAGAACCTTGAATGGATCCTTGGATATATTGAGTAATTGGGACTCAATTGAAGATACACCATGTAGTTGGTATGGAGTGAGTTGCAACATGAAGAAGGAAGTAGTACAATTGGATCTAAGATATGTGGATTTGCTTGGAAAACTCCCAACAAATTTCACTTCATTGTTCTCCATGACTAGTCTTATCTTAACCGGAACGAACCTCACCGGTTCTATCCCAAAAGAACTAGGCAATCTTTTTGAACTCAGCTACTTGGACTTGAGTGACAATGCATTGAGTGGCGAAATCCCGAGTGAGCTTTGCTACTTGCCCAAACTCGAGGAACTTCATTTGAACTCGAACGAGCTTGTGGGGTCCATACCAATCGCAATTGGGAGCCTCACAAAGTTAACAAAGCTGATCTTATATGACAATCAGCTTAGCGGCAAAATCCCGAACACAATCGGAAACATGAGGAATCTTCAAGTGATAAGAGCTGGTGGAAACAAAAATCTAGAAGGACCTTTACCACAAGAAATTGGAAACTGTTCCAATTTGATCATGTTGGGTTTAGCAGAAACAAGCATCTCTGGTTTCATTCCACCAACAATTGGACTATTGAAGAAACTTGAAACATTGGCAATTTACACTTCACTCCTCTCTGGCCAAATTCCACCCGAAATCGGTGACTGCACAAATCTTCAAAACATTTACCTTTATGAAAACTCACTCACAGGTTCCATTCCAACCAAATTAGGAAACCTTAAGAATCTCAAAAACCTGTTACTCTGGCAGAACAACTTAGTTGGGACCATTCCCCAAGAGATTGGGAACTGTAACCAATTATCAGTGATCGACGCGTCAATGAATTCAATAACAGGAAGCATTCCAAAAACATTTGGAAATTTAACTTTGCTCGAAGAACTTCAACTGAGTGTGAACCAAATTTCCGGCGAAATTCCTACAGAATTAGGGAACTGTGATCAACTAACTCACTTGGAGCTCGATAACAACCTTATAACCGGTACAATACCTTCCGAATTAGGAAACCTTGGGAATCTAACATTGTTGTTCTTATGGCATAATAGGTTACAAGGTAATATACCTTCATCTCTTTCTAATTGTGAAAACCTTGAAGCTATTGATCTGTCACAGAATGGATTAACAGGTCCAATACCAAAAGGGATATTCGAGCTCAAGAATCTCAATAAGCTTTTGCTTCTTTCTAATAATCTCTCTGGTAAAATCCCTTCTCAGATTGGGAATTGTTCTTCTCTTATTCGCTTTCGAGCGAATAACAACAACATTACCGGTACCGTTCCTTCGGAGATTGGTAATCTTAAGAATTTGAATTTCCTTGACTTAGGCAGCAATAAAATTGAAGGGTTTATACCCGAGGAAATCTCCGGCTGCCGGAACCTTACCTTTCTGGACTTGCATTCCAATTCCATTGCCGGAAATTTGCCGGAGAGTCTGAGTCAGCTTGTTTCTCTTCAATTTCTTGATGTCTCCGATAACATGATCGAAGGTGTATTAAGCCCTGCTCTCGGCTCTCTCGCTGCTCTCACCAAACTGATTCTCCGGAAGAATCGAATCTCCGGTTCGATTCCGATGAAACTCGGTTCATGTGTCAAGTTACAGTTGCTGGACCTCAGCAGTAATCAATTCTCCGGTGAAATCCCCGGAAGCATCGGAGATATTCCGGCGCTTGAAATAGCTTTGAATCTGAGCATGAACCAACTCACCGGCGAGATTCCTAAGGAGTTTTCAGCTTTAACGAAGCTCGGAGTTCTTGACCTATCTCACAATGTTCTCGCCGGAAACCTAGATTATCTCGCCGGATTGGAAAATCTTGTGGTTCTCAATATCTCAAACAACAAATTCTCCGGTCACGTTCCGAACACACCGTTCTTCGAGAAGCTTCCTCTAAACGTTCTCTCAGGGAATCCTTCACTATGCTTCGCCGGCAACCAGTGCGGCGGCGAAAGTGGCGGAAAATCAAATCGCGGTGCGAGGGAAGCGCGCGTGGTGATGATCGTTCTTCTTTGCGTCGCGTGCTTTTTACTCATGGCGGCGCTGTACGTTGTCGTCGCAGCAAAACGACGCGGGGACCAAGAAAACGACGTAGAGCTAAATGGAAAAGACAGTGACGTGGACATGGTTCCACCATGGGAGGTGACACTGTACCAGAAACTCGATCTGTCAATATCGGACGTGGCAAAATGCATCTCTGCTGGCAACATTATCGGCCACGGTCGATCGGGCGTCGTTTATAAAGTTACCATGCCAGCAACAGGTTTAACCATTGCGGTTAAAAAGTTTCGGACATCGGAGAAATTCTCAGCATCGTCATTTTCATCGGAGATTGCCACGCTAGCAAGAATTCGACACCGAAATATTGTTCGGTTATTGGGTTGGGGTGCAAACAGGAGGACAAAGTTActgttttatgattttttaccGAATGGTAACTTGGATGCGATGTTACACGAGGGGTGCACAGGATTAGCCGTGGAATGGGAGACACGACTTAAAATAGCATTGGGTGTTGCCGAGGGTTTAGCTTATTTGCATCATGATTGTGTACCTGCTATCTTGCATCGGGATGTGAAGTCgcaaaatattttgataggAGATAGATATGAAGCATGTTTGGCTGATTTTGGATTTGCTCGTTTTGTTGAAGAACCTCGCTCTTCGTTTTCTGTTAATCCTCAGTTCGCCGGTTCTTATGGCTACATTGCTCCCGAGTATGCTTGTATGCTTAAAATAACAGAGAAAAGTGATGTATATAGCTATGGTGTGGTCTTACTAGAGATAATAACAGGGAAAAGACCAGTTGATCCATCATTCCCTGATGGAATACATGTTATTCAATGGGTTAGGGAGCATTTAAAGAGCAAGAAGGACCCAATTGAGGTTATTGATTCCAAGCTTCAAGGTCATCCAGATACACAAATACAAGAGATGTTACAAGCACTTGGTATTGCTTTATTGTGTACGAGTAATCGAGCTGACGATCGGCCCACCATGAAGGATGTCGCTGCATTATTGAGAGAAATTCAACATGACACTACATCAGGTGCTGAACCCCACAAGCCTAAAAGATCTGAAGCTTCGTcgtattcttcttcttcagtgACCCCGGCTCAGTTGTTGCTTTTACAATCCAATTCACATTCCTCGTCTATTTCCTATTCCTCTTCCTCAGCCGCAGCAGCCTACCATTCACCAAAGATGAATTTGACATAA 3345 0.4221 MPVNQLTLFFLSFFLLLPQHSFLSFAVNPQGEALLSWKRTLNGSLDILSNWDSIEDTPCSWYGVSCNMKKEVVQLDLRYVDLLGKLPTNFTSLFSMTSLILTGTNLTGSIPKELGNLFELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNELVGSIPIAIGSLTKLTKLILYDNQLSGKIPNTIGNMRNLQVIRAGGNKNLEGPLPQEIGNCSNLIMLGLAETSISGFIPPTIGLLKKLETLAIYTSLLSGQIPPEIGDCTNLQNIYLYENSLTGSIPTKLGNLKNLKNLLLWQNNLVGTIPQEIGNCNQLSVIDASMNSITGSIPKTFGNLTLLEELQLSVNQISGEIPTELGNCDQLTHLELDNNLITGTIPSELGNLGNLTLLFLWHNRLQGNIPSSLSNCENLEAIDLSQNGLTGPIPKGIFELKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANNNNITGTVPSEIGNLKNLNFLDLGSNKIEGFIPEEISGCRNLTFLDLHSNSIAGNLPESLSQLVSLQFLDVSDNMIEGVLSPALGSLAALTKLILRKNRISGSIPMKLGSCVKLQLLDLSSNQFSGEIPGSIGDIPALEIALNLSMNQLTGEIPKEFSALTKLGVLDLSHNVLAGNLDYLAGLENLVVLNISNNKFSGHVPNTPFFEKLPLNVLSGNPSLCFAGNQCGGESGGKSNRGAREARVVMIVLLCVACFLLMAALYVVVAAKRRGDQENDVELNGKDSDVDMVPPWEVTLYQKLDLSISDVAKCISAGNIIGHGRSGVVYKVTMPATGLTIAVKKFRTSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDFLPNGNLDAMLHEGCTGLAVEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKSQNILIGDRYEACLADFGFARFVEEPRSSFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSYGVVLLEIITGKRPVDPSFPDGIHVIQWVREHLKSKKDPIEVIDSKLQGHPDTQIQEMLQALGIALLCTSNRADDRPTMKDVAALLREIQHDTTSGAEPHKPKRSEASSYSSSSVTPAQLLLLQSNSHSSSISYSSSSAAAAYHSPKMNLT 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02608 1114 MobiDBLite consensus disorder prediction 1054 1068 - -
Tsu04g02608 1114 SMART serkin_6 774 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02608 1114 Pfam Protein kinase domain 777 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02608 1114 Gene3D Transferase(Phosphotransferase) domain 1 851 1074 - -
Tsu04g02608 1114 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 1070 - -
Tsu04g02608 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Tsu04g02608 1114 MobiDBLite consensus disorder prediction 1054 1075 - -
Tsu04g02608 1114 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Tsu04g02608 1114 PRINTS Leucine-rich repeat signature 120 133 - -
Tsu04g02608 1114 PRINTS Leucine-rich repeat signature 623 636 - -
Tsu04g02608 1114 Gene3D Ribonuclease Inhibitor 436 690 IPR032675 -
Tsu04g02608 1114 Gene3D Ribonuclease Inhibitor 200 334 IPR032675 -
Tsu04g02608 1114 Pfam Leucine rich repeat 463 515 IPR001611 GO:0005515
Tsu04g02608 1114 Gene3D Ribonuclease Inhibitor 26 199 IPR032675 -
Tsu04g02608 1114 Gene3D Phosphorylase Kinase; domain 1 755 850 - -
Tsu04g02608 1114 SUPERFAMILY Protein kinase-like (PK-like) 759 1050 IPR011009 -
Tsu04g02608 1114 SUPERFAMILY RNI-like 75 443 - -
Tsu04g02608 1114 PANTHER OS01G0170300 PROTEIN 7 1070 - -
Tsu04g02608 1114 ProSiteProfiles Protein kinase domain profile. 774 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02608 1114 SUPERFAMILY L domain-like 375 685 - -
Tsu04g02608 1114 SMART LRR_sd22_2 117 149 - -
Tsu04g02608 1114 SMART LRR_sd22_2 623 648 - -
Tsu04g02608 1114 SMART LRR_sd22_2 478 501 - -
Tsu04g02608 1114 SMART LRR_sd22_2 165 194 - -
Tsu04g02608 1114 SMART LRR_sd22_2 526 544 - -
Tsu04g02608 1114 SMART LRR_sd22_2 262 288 - -
Tsu04g02608 1114 SMART LRR_sd22_2 382 411 - -
Tsu04g02608 1114 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Tsu04g02608 1114 Gene3D Ribonuclease Inhibitor 335 426 IPR032675 -
Tsu04g02608 1114 SMART LRR_typ_2 550 574 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 646 679 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 382 406 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 165 189 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 430 454 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 478 502 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 526 549 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 334 358 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 286 310 IPR003591 -
Tsu04g02608 1114 SMART LRR_typ_2 117 141 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02608 Tsu-Chr4 29472671 29477276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02608 25 1102 Receptor kinase-like Gene Family AT5G56040 54.052 0.0 1133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g02608 Pkinase 9.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02608 - - gmx:100778064 1753.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02608 04 29472671 29477276 Tsu04g02608 04 29472671 29477276 ECH