Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02596 ATGGTTGGGTTAGACCAGGGTTTCCTCTTAGAGGACCTTCTCCTCAACTTAGACTACTTTCTCTTGAGAGGATCAGCTTCTGAAGGATCTCCAGCTAGGGATATAAAAGGTACTTCACTTTTATTTGATCAAAGGGAATTAATAAAAAtggcatcatcatcatcatcatccagcTCTTACAATTCACCATGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCACAAAAATTTGCAAATGTTCACAAAATATTTGGTGCTAGCAATGTGACAAAGCTTCTCAATGAACTTCTCCCTCAACAAAGAGAAGATGCAGTGAACTCACTTGCCTATGAAGCAGAAGCAAGAGTGAGAGACCCAGTTTATGGCTGTGTAGGTGCTATCTCTTTCCTTCAAAAACAAGTTCAGAGGCTTCAAAAGGAACTTGATGCTGCTAACACTGATCTTCTTCGCTATTCACTCACCGATCATATCCCTCCGGTGCCAACGTCTCTTTCTGTGCCTTCAGGAATGGTATCAGTTCAACAAATGCCAGAAAGATTACAGTTAAATGCAAGAAATGAAGGAAGTGGATTTTTTGAACAATCTCCTAATACTACTAATTATTCTTTTCCATATTCTCTTCCTTGGACCGATACTTCCTCCGAGGATATGAGTGAgggtggaggaggaggaggaggagaaggAGGAGGAAATCATCTGAGTTga 750 0.376 MVGLDQGFLLEDLLLNLDYFLLRGSASEGSPARDIKGTSLLFDQRELIKMASSSSSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQKQVQRLQKELDAANTDLLRYSLTDHIPPVPTSLSVPSGMVSVQQMPERLQLNARNEGSGFFEQSPNTTNYSFPYSLPWTDTSSEDMSEGGGGGGGEGGGNHLS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02596 249 Pfam Lateral organ boundaries (LOB) domain 63 159 IPR004883 -
Tsu04g02596 249 PANTHER ELONGATED PETIOLULE 1 55 239 - -
Tsu04g02596 249 ProSiteProfiles LOB domain profile. 62 163 IPR004883 -
Tsu04g02596 249 Coils Coil 142 169 - -
Tsu04g02596 249 MobiDBLite consensus disorder prediction 203 232 - -
Tsu04g02596 249 MobiDBLite consensus disorder prediction 203 249 - -
Tsu04g02596 249 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 55 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02596 Tsu-Chr4 29310951 29314394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02596 54 226 AS2 family AT5G63090 66.477 9.74e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g02596 LOB 5.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02596 - - gmx:100803667 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02596 04 29310951 29314394 Tsu03g02292 03 25802806 25803390 ECH
Tsu04g02596 04 29310951 29314394 Tsu04g02596 04 29310951 29314394 ECH
Tsu04g02596 04 29310951 29314394 Tsu03g02292 03 25802806 25803390 PCT