Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02591 atggGTCGTCATTCATGTTGTTTAAAGCAAAAATTAAGAAAAGGTTTATGGTCccctgaagaagatgaaaagctTTTCAATCACATAACCAGATTTGGTGTTGGTTGTTGGAGTTCTGTTCCAAAACAAGCTGGGCTTCAAAGATGTGGAAAAAGTTGCAGATTAAGATGGATAAATTATTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCACAACAAGAAGAAGATCTTATAATCAGTCTTCATCAGCTCCTTGGAAACAGGTGGGCTCAAATAGCGGCACAATTACCGGGAAGAACagataatgaaataaaaaacttttggaATTCATGTTTAAAGAAGAAGCTTATGAAGCAAGGGATTGATCCAACAACACACAAACCTCATACAGAAGAGAACAAAACCACagaaacaataacaacaacgaCAACAACACCTATGCAAATACCGTCGGTTACATCACAAGGTTCATCGTTTCTAATAAGCGATTCGAGTTACTATGACAATAATGGTCTAAGTCTAACAGAACCATCAAGAGAAATTTTCAACACCAAACCAGCATTGGACATGGACCCTTTATTCTGCTATGATTTCCAATCTGGTTATAACTTACCTCTGAATAATTATCAAAGCCAAAGCCAATTTGGACTTAATTCAAACTATGGATTCACTTCAATGCCGAGTCTAACAAATTCCGATCACGCAAATGTATCGGTAACAGAGTTTTCAGACAACAATTCAGCATCAAAAATCAGCTCAATGTTCATGAATGATCAAGTGAAAGAAAGCAATTCAAGCAATAGTTCAAATATGAGTACTATTTATCCATCTCAGGTTACAACTACTACTATGATGGAAAATAATAATGCAGGATTTTCTTGGGATGGATCAGAGAATAAATTGGACCCtttgtttcaatttcaagtCAATGCTATAAAATCTGAAGAATTTGGAACAAGTTCATGGGAAGAAGCACATATTCAAACTCACAATTCAATAGATTTTAGTAGCTATCATCCTTTAACATCACTTTCAGAAGATTTAACAGAAGCAAATTTTGATGCATTCCACCATATATGA 1080 0.3278 MGRHSCCLKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPHTEENKTTETITTTTTTPMQIPSVTSQGSSFLISDSSYYDNNGLSLTEPSREIFNTKPALDMDPLFCYDFQSGYNLPLNNYQSQSQFGLNSNYGFTSMPSLTNSDHANVSVTEFSDNNSASKISSMFMNDQVKESNSSNSSNMSTIYPSQVTTTTMMENNNAGFSWDGSENKLDPLFQFQVNAIKSEEFGTSSWEEAHIQTHNSIDFSSYHPLTSLSEDLTEANFDAFHHI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02591 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu04g02591 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu04g02591 359 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu04g02591 359 CDD SANT 70 109 IPR001005 -
Tsu04g02591 359 PANTHER MYB TRANSCRIPTION FACTOR 1 355 - -
Tsu04g02591 359 CDD SANT 17 61 IPR001005 -
Tsu04g02591 359 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tsu04g02591 359 PANTHER MYB DOMAIN PROTEIN 55 1 355 - -
Tsu04g02591 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu04g02591 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu04g02591 359 Coils Coil 356 359 - -
Tsu04g02591 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g02591 359 Gene3D - 69 142 - -
Tsu04g02591 359 SMART sant 66 114 IPR001005 -
Tsu04g02591 359 SMART sant 13 63 IPR001005 -
Tsu04g02591 359 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02591 Tsu-Chr4 29268579 29270039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02591 1 148 MYB Transcription Factor Family AT4G01680 77.703 1.29e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g02591 Myb_DNA-binding 7.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02591 K09422 - gmx:100811140 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02591 04 29268579 29270039 Tsu04g02591 04 29268579 29270039 ECH
Tsu04g02591 04 29268579 29270039 Tsu03g02295 03 25874495 25875863 PCT