Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02589 ATGACGACGAGTTTGAAGAAGAACCGAAAGAAGAGAGGTCACGTGAGCGCCGGTCACGGTCGCATCGGAAAACACCGAAAGCACCCTGGAGGTCGCGGTAACGCCGGAGGAATGCATCACCACCGTATCCTCTTCGACAAATACCACCCTGGTTATTTCGGCAAAGTTGGAATGCGTTACTTTCACAAGCTCCGTAACAAATTCTATTCACCCACCGTCAATATAGACAAGCTTTGGTCATTGATTCCTCAACAGGTTAAGGATCAAGCTTATGCTGATAAAACAAAAGCACCTTTGATTGATGTCAGTAATTTTGGATTCTTCAAGGTTTTAGGAAAAGGTGTTCTTCCTAAGAATCAACCTGTTGTTGTTAAGGCGAAACTTATTTCGAAGATTGCTGAGAAGAAAATTAAGGAGGCTGGTGGTGCTGTTCTTCTCACTGCTTGA 447 0.443 MTTSLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPTVNIDKLWSLIPQQVKDQAYADKTKAPLIDVSNFGFFKVLGKGVLPKNQPVVVKAKLISKIAEKKIKEAGGAVLLTA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02589 148 MobiDBLite consensus disorder prediction 1 35 - -
Tsu04g02589 148 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 148 - -
Tsu04g02589 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Tsu04g02589 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Tsu04g02589 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Tsu04g02589 148 Gene3D - 58 148 - -
Tsu04g02589 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Tsu04g02589 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Tsu04g02589 148 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02589 Tsu-Chr4 29244360 29245184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02589 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 82.432 4.88e-86 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02589 K02900 - tcc:18603983 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02589 04 29244360 29245184 Tsu03g02302 03 26011573 26012248 PCT